Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
TRIM4Q9C037 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM4Q9C037 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.49■□□□□ 0.71
TRIM4Q9C037 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
TRIM4Q9C037 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.49■□□□□ 0.71
TRIM4Q9C037 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.49■□□□□ 0.71
TRIM4Q9C037 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM4Q9C037 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM4Q9C037 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM4Q9C037 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM4Q9C037 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM4Q9C037 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM4Q9C037 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM4Q9C037 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM4Q9C037 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.48■□□□□ 0.71
TRIM4Q9C037 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM4Q9C037 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM4Q9C037 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM4Q9C037 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM4Q9C037 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM4Q9C037 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM4Q9C037 AC007225.1-201ENST00000566331 1836 ntBASIC19.48■□□□□ 0.71
TRIM4Q9C037 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM4Q9C037 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM4Q9C037 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM4Q9C037 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM4Q9C037 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM4Q9C037 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRIM4Q9C037 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 AC027702.1-201ENST00000563810 1770 ntBASIC19.47■□□□□ 0.71
TRIM4Q9C037 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
TRIM4Q9C037 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRIM4Q9C037 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.47■□□□□ 0.71
TRIM4Q9C037 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.47■□□□□ 0.71
TRIM4Q9C037 AC008694.1-202ENST00000636953 945 ntBASIC19.47■□□□□ 0.71
TRIM4Q9C037 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM4Q9C037 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRIM4Q9C037 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRIM4Q9C037 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.47■□□□□ 0.71
TRIM4Q9C037 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.47■□□□□ 0.71
TRIM4Q9C037 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM4Q9C037 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 AC011484.1-201ENST00000377652 1995 ntBASIC19.46■□□□□ 0.71
TRIM4Q9C037 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 POU5F1P4-201ENST00000413175 1085 ntBASIC19.46■□□□□ 0.71
TRIM4Q9C037 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 AC010141.2-201ENST00000452426 721 ntBASIC19.46■□□□□ 0.71
TRIM4Q9C037 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 MYC-209ENST00000641252 345 ntBASIC19.46■□□□□ 0.71
TRIM4Q9C037 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 AC020763.4-201ENST00000623414 4170 ntBASIC19.46■□□□□ 0.71
TRIM4Q9C037 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM4Q9C037 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM4Q9C037 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM4Q9C037 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM4Q9C037 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM4Q9C037 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
TRIM4Q9C037 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms