Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 RFPL4AP1-201ENST00000530883 850 ntBASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL25A1Q9BXS0 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 AC112482.1-201ENST00000492080 688 ntBASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 REXO1L6P-202ENST00000619970 1078 ntBASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL25A1Q9BXS0 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 AC009065.1-201ENST00000564055 1225 ntBASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL25A1Q9BXS0 ABCB10P4-201ENST00000566803 2184 ntBASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 KRT18P28-201ENST00000453838 1332 ntBASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.02■□□□□ 0.8
COL25A1Q9BXS0 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL25A1Q9BXS0 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL25A1Q9BXS0 AC093525.10-201ENST00000625130 1569 ntBASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 WDR53-203ENST00000429115 683 ntTSL 2 BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 MIR3687-2-201ENST00000577708 61 ntBASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 MIR3687-1-201ENST00000614492 61 ntBASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 AC148477.8-201ENST00000624298 468 ntBASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL25A1Q9BXS0 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
COL25A1Q9BXS0 AL162741.1-201ENST00000565563 1558 ntBASIC20■□□□□ 0.79
COL25A1Q9BXS0 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20■□□□□ 0.79
COL25A1Q9BXS0 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL25A1Q9BXS0 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
COL25A1Q9BXS0 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL25A1Q9BXS0 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20■□□□□ 0.79
COL25A1Q9BXS0 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
COL25A1Q9BXS0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20■□□□□ 0.79
COL25A1Q9BXS0 KRT18P67-201ENST00000432816 1264 ntBASIC20■□□□□ 0.79
COL25A1Q9BXS0 TUBB8P6-201ENST00000436895 1288 ntBASIC20■□□□□ 0.79
COL25A1Q9BXS0 DNAJB3-202ENST00000449667 1266 ntBASIC20■□□□□ 0.79
COL25A1Q9BXS0 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL25A1Q9BXS0 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
COL25A1Q9BXS0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC20■□□□□ 0.79
COL25A1Q9BXS0 HLA-A-209ENST00000638375 975 ntBASIC20■□□□□ 0.79
COL25A1Q9BXS0 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL25A1Q9BXS0 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL25A1Q9BXS0 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL25A1Q9BXS0 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL25A1Q9BXS0 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL25A1Q9BXS0 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms