Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
NR1H4Q96RI1 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.47■□□□□ 0.55
NR1H4Q96RI1 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
NR1H4Q96RI1 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
NR1H4Q96RI1 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NR1H4Q96RI1 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NR1H4Q96RI1 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 AL031598.1-201ENST00000561511 1773 ntBASIC18.46■□□□□ 0.55
NR1H4Q96RI1 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 OR2I1P-207ENST00000453522 948 ntBASIC18.46■□□□□ 0.55
NR1H4Q96RI1 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.46■□□□□ 0.55
NR1H4Q96RI1 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 AC241377.3-202ENST00000626088 1088 ntBASIC18.46■□□□□ 0.55
NR1H4Q96RI1 AC241585.3-202ENST00000628937 1088 ntBASIC18.46■□□□□ 0.55
NR1H4Q96RI1 AC245100.8-202ENST00000629247 1058 ntBASIC18.46■□□□□ 0.55
NR1H4Q96RI1 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 DPP3P2-201ENST00000416030 1696 ntBASIC18.46■□□□□ 0.55
NR1H4Q96RI1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
NR1H4Q96RI1 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.54
NR1H4Q96RI1 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.46■□□□□ 0.54
NR1H4Q96RI1 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
NR1H4Q96RI1 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 AC006455.2-201ENST00000429931 906 ntBASIC18.45■□□□□ 0.54
NR1H4Q96RI1 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 AC099791.2-201ENST00000605725 427 ntBASIC18.45■□□□□ 0.54
NR1H4Q96RI1 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 pRNA.6-201ENST00000610482 90 ntBASIC18.45■□□□□ 0.54
NR1H4Q96RI1 pRNA.5-201ENST00000612139 90 ntBASIC18.45■□□□□ 0.54
NR1H4Q96RI1 pRNA.11-201ENST00000618423 90 ntBASIC18.45■□□□□ 0.54
NR1H4Q96RI1 pRNA.13-201ENST00000619112 90 ntBASIC18.45■□□□□ 0.54
NR1H4Q96RI1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 AC009237.14-201ENST00000609975 1594 ntBASIC18.45■□□□□ 0.54
NR1H4Q96RI1 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NR1H4Q96RI1 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NR1H4Q96RI1 AC009053.2-201ENST00000563701 2365 ntBASIC18.44■□□□□ 0.54
NR1H4Q96RI1 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NR1H4Q96RI1 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.43■□□□□ 0.54
NR1H4Q96RI1 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.43■□□□□ 0.54
NR1H4Q96RI1 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
NR1H4Q96RI1 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms