Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.52■□□□□ 0.55
PTCHD1Q96NR3 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PTCHD1Q96NR3 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTCHD1Q96NR3 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTCHD1Q96NR3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 AC004264.1-201ENST00000608354 794 ntBASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 AC066615.1-201ENST00000640911 628 ntBASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 AFG3L1P-217ENST00000557444 2447 ntBASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 AP001271.2-201ENST00000624018 1556 ntBASIC18.51■□□□□ 0.55
PTCHD1Q96NR3 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.5■□□□□ 0.55
PTCHD1Q96NR3 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.49■□□□□ 0.55
PTCHD1Q96NR3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms