Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
LRCH3Q96II8 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.31■■□□□ 1
LRCH3Q96II8 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.3■■□□□ 1
LRCH3Q96II8 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.3■■□□□ 1
LRCH3Q96II8 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.3■■□□□ 1
LRCH3Q96II8 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.3■■□□□ 1
LRCH3Q96II8 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
LRCH3Q96II8 HYMAI.1-201ENST00000620949 238 ntBASIC21.3■■□□□ 1
LRCH3Q96II8 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 AC131212.4-201ENST00000623606 975 ntBASIC21.3■■□□□ 1
LRCH3Q96II8 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
LRCH3Q96II8 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.3■■□□□ 1
LRCH3Q96II8 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
LRCH3Q96II8 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRCH3Q96II8 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
LRCH3Q96II8 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRCH3Q96II8 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.29■■□□□ 1
LRCH3Q96II8 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
LRCH3Q96II8 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRCH3Q96II8 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
LRCH3Q96II8 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
LRCH3Q96II8 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.29■■□□□ 1
LRCH3Q96II8 AC079781.3-201ENST00000449110 356 ntBASIC21.29■■□□□ 1
LRCH3Q96II8 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.29■■□□□ 1
LRCH3Q96II8 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.29■■□□□ 1
LRCH3Q96II8 AL160237.2-201ENST00000556165 472 ntBASIC21.29■■□□□ 1
LRCH3Q96II8 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
LRCH3Q96II8 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRCH3Q96II8 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.29■■□□□ 1
LRCH3Q96II8 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRCH3Q96II8 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.28■■□□□ 1
LRCH3Q96II8 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRCH3Q96II8 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
LRCH3Q96II8 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRCH3Q96II8 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.28■■□□□ 1
LRCH3Q96II8 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.28■■□□□ 1
LRCH3Q96II8 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRCH3Q96II8 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC21.28■■□□□ 1
LRCH3Q96II8 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC21.28■■□□□ 1
LRCH3Q96II8 TBCB-205ENST00000585746 875 ntTSL 3 BASIC21.28■■□□□ 1
LRCH3Q96II8 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
LRCH3Q96II8 AC011298.2-201ENST00000617989 482 ntBASIC21.28■■□□□ 1
LRCH3Q96II8 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC21.28■■□□□ 1
LRCH3Q96II8 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.28■■□□□ 1
LRCH3Q96II8 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRCH3Q96II8 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.28■■□□□ 1
LRCH3Q96II8 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.28■■□□□ 1
LRCH3Q96II8 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.28■■□□□ 1
LRCH3Q96II8 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.28■■□□□ 1
LRCH3Q96II8 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRCH3Q96II8 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
LRCH3Q96II8 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRCH3Q96II8 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
LRCH3Q96II8 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRCH3Q96II8 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRCH3Q96II8 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.27■■□□□ 1
LRCH3Q96II8 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.27■■□□□ 1
LRCH3Q96II8 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.27■■□□□ 1
LRCH3Q96II8 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC21.27■■□□□ 1
LRCH3Q96II8 AC117500.6-201ENST00000624871 588 ntBASIC21.27■■□□□ 1
LRCH3Q96II8 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.27■■□□□ 1
LRCH3Q96II8 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRCH3Q96II8 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.27■■□□□ 1
LRCH3Q96II8 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.27■■□□□ 1
LRCH3Q96II8 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
LRCH3Q96II8 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
LRCH3Q96II8 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.27■□□□□ 0.99
LRCH3Q96II8 AC080038.3-201ENST00000623346 1952 ntBASIC21.27■□□□□ 0.99
LRCH3Q96II8 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRCH3Q96II8 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRCH3Q96II8 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRCH3Q96II8 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRCH3Q96II8 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRCH3Q96II8 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRCH3Q96II8 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC21.26■□□□□ 0.99
LRCH3Q96II8 HMGN1P19-201ENST00000436976 333 ntBASIC21.26■□□□□ 0.99
LRCH3Q96II8 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.26■□□□□ 0.99
LRCH3Q96II8 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
LRCH3Q96II8 AL512604.3-201ENST00000569583 964 ntBASIC21.26■□□□□ 0.99
LRCH3Q96II8 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC21.26■□□□□ 0.99
LRCH3Q96II8 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRCH3Q96II8 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRCH3Q96II8 LINC01311-201ENST00000565162 1445 ntBASIC21.26■□□□□ 0.99
LRCH3Q96II8 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.26■□□□□ 0.99
LRCH3Q96II8 RCC2P6-201ENST00000526625 1557 ntBASIC21.26■□□□□ 0.99
LRCH3Q96II8 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms