Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE4Q96A23 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE4Q96A23 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE4Q96A23 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE4Q96A23 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE4Q96A23 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE4Q96A23 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE4Q96A23 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 TCF3P1-201ENST00000423021 1937 ntBASIC17.62■□□□□ 0.41
CPNE4Q96A23 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE4Q96A23 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE4Q96A23 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CPNE4Q96A23 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE4Q96A23 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.61■□□□□ 0.41
CPNE4Q96A23 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CPNE4Q96A23 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 KRT16P5-201ENST00000455284 522 ntBASIC17.61■□□□□ 0.41
CPNE4Q96A23 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.61■□□□□ 0.41
CPNE4Q96A23 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.61■□□□□ 0.41
CPNE4Q96A23 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE4Q96A23 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE4Q96A23 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
CPNE4Q96A23 AIRN-201ENST00000601203 4374 ntBASIC17.6■□□□□ 0.41
CPNE4Q96A23 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.59■□□□□ 0.41
CPNE4Q96A23 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CPNE4Q96A23 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.59■□□□□ 0.41
CPNE4Q96A23 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.59■□□□□ 0.41
CPNE4Q96A23 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CPNE4Q96A23 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE4Q96A23 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
CPNE4Q96A23 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.59■□□□□ 0.41
CPNE4Q96A23 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE4Q96A23 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE4Q96A23 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms