Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 AL121672.3-201ENST00000608644 468 ntBASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
SMC1BQ8NDV3 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 AC079834.2-201ENST00000609776 1949 ntBASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 TEX30-205ENST00000376029 959 ntTSL 2 BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 PMS2P1-201ENST00000431037 1228 ntBASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 BX276092.5-203ENST00000456199 560 ntBASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 AP003041.3-201ENST00000527151 707 ntBASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 GCSHP2-201ENST00000560971 527 ntBASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 HLA-A-209ENST00000638375 975 ntBASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 AC011484.1-201ENST00000377652 1995 ntBASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SMC1BQ8NDV3 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 KRT18P1-202ENST00000452408 1331 ntBASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 TSPY19P-201ENST00000418461 509 ntBASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 SPDYE15P-201ENST00000424157 909 ntBASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 TSPY18P-201ENST00000441642 509 ntBASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 NEK4P2-201ENST00000580004 1012 ntBASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 AC120114.3-201ENST00000611923 658 ntBASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 MIR2861-201ENST00000636310 90 ntBASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
SMC1BQ8NDV3 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC23.33■■□□□ 1.32
SMC1BQ8NDV3 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 AP002469.2-201ENST00000531724 424 ntBASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 LINC01711-201ENST00000598340 967 ntBASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 AL732292.2-201ENST00000609649 430 ntBASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC23.32■■□□□ 1.32
SMC1BQ8NDV3 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 BX640515.1-201ENST00000617215 977 ntBASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
SMC1BQ8NDV3 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 AC016734.2-201ENST00000624325 1377 ntBASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 FAM220CP-201ENST00000395253 831 ntBASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms