Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 AL023803.3-201ENST00000615559 522 ntBASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 FBXW4P1-201ENST00000426721 2239 ntBASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 AL031432.5-201ENST00000641059 760 ntBASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
SLC44A3Q8N4M1 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SLC44A3Q8N4M1 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
SLC44A3Q8N4M1 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SLC44A3Q8N4M1 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 IER3-202ENST00000376377 1350 ntBASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 TSPY17P-201ENST00000450329 467 ntBASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SLC44A3Q8N4M1 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 LINC00565-201ENST00000562710 2331 ntBASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 HOMER2P1-201ENST00000455653 964 ntBASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 FP700111.2-201ENST00000619190 1892 ntBASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.13■□□□□ 0.81
SLC44A3Q8N4M1 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 DUSP5P1-201ENST00000441325 1139 ntBASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 AL353719.1-201ENST00000566847 864 ntBASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 AL512604.3-201ENST00000569583 964 ntBASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 AC093458.2-201ENST00000623150 629 ntBASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms