Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.36■□□□□ 0.85
NPAS3Q8IXF0 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.36■□□□□ 0.85
NPAS3Q8IXF0 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
NPAS3Q8IXF0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPAS3Q8IXF0 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPAS3Q8IXF0 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
NPAS3Q8IXF0 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NPAS3Q8IXF0 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
NPAS3Q8IXF0 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 AC004951.3-201ENST00000418645 1148 ntBASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 BX664615.1-201ENST00000443558 458 ntBASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.35■□□□□ 0.85
NPAS3Q8IXF0 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 AK4P3-201ENST00000418260 669 ntBASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 MFAP1P1-201ENST00000442257 1255 ntBASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 AC096733.2-201ENST00000609937 1394 ntBASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPAS3Q8IXF0 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 HMGA1P5-201ENST00000412453 271 ntBASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 AC022616.7-201ENST00000525383 220 ntBASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.33■□□□□ 0.85
NPAS3Q8IXF0 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPAS3Q8IXF0 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPAS3Q8IXF0 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
NPAS3Q8IXF0 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
NPAS3Q8IXF0 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.33■□□□□ 0.84
NPAS3Q8IXF0 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 SMG8-203ENST00000578922 2178 ntBASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 FAM207BP-201ENST00000447172 505 ntBASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 AC063952.2-201ENST00000498792 1227 ntBASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.32■□□□□ 0.84
NPAS3Q8IXF0 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms