Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 AC009299.2-201ENST00000482477 511 ntBASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28AQ8IWP9 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 CICP6-201ENST00000457191 2729 ntBASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC28AQ8IWP9 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 TSPY9P-201ENST00000440215 945 ntBASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 TSPY11P-201ENST00000442607 1045 ntBASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 AL451085.2-201ENST00000605085 799 ntBASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms