Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
KRT39Q6A163 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
KRT39Q6A163 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT39Q6A163 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
KRT39Q6A163 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
KRT39Q6A163 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
KRT39Q6A163 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.21■□□□□ 0.99
KRT39Q6A163 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT39Q6A163 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
KRT39Q6A163 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.21■□□□□ 0.99
KRT39Q6A163 AC069544.1-201ENST00000609399 999 ntBASIC21.21■□□□□ 0.99
KRT39Q6A163 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
KRT39Q6A163 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.21■□□□□ 0.99
KRT39Q6A163 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
KRT39Q6A163 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.21■□□□□ 0.99
KRT39Q6A163 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT39Q6A163 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT39Q6A163 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.99
KRT39Q6A163 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT39Q6A163 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.2■□□□□ 0.98
KRT39Q6A163 YBX1P10-201ENST00000444752 975 ntBASIC21.2■□□□□ 0.98
KRT39Q6A163 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.2■□□□□ 0.98
KRT39Q6A163 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT39Q6A163 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.2■□□□□ 0.98
KRT39Q6A163 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.2■□□□□ 0.98
KRT39Q6A163 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT39Q6A163 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.2■□□□□ 0.98
KRT39Q6A163 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT39Q6A163 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT39Q6A163 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
KRT39Q6A163 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT39Q6A163 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT39Q6A163 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.2■□□□□ 0.98
KRT39Q6A163 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT39Q6A163 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT39Q6A163 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
KRT39Q6A163 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
KRT39Q6A163 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
KRT39Q6A163 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
KRT39Q6A163 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.19■□□□□ 0.98
KRT39Q6A163 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.19■□□□□ 0.98
KRT39Q6A163 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.19■□□□□ 0.98
KRT39Q6A163 PRKY-204ENST00000533551 1019 ntBASIC21.19■□□□□ 0.98
KRT39Q6A163 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.19■□□□□ 0.98
KRT39Q6A163 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
KRT39Q6A163 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.19■□□□□ 0.98
KRT39Q6A163 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
KRT39Q6A163 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT39Q6A163 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.19■□□□□ 0.98
KRT39Q6A163 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.18■□□□□ 0.98
KRT39Q6A163 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.18■□□□□ 0.98
KRT39Q6A163 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.18■□□□□ 0.98
KRT39Q6A163 MIR4651-201ENST00000582622 73 ntBASIC21.18■□□□□ 0.98
KRT39Q6A163 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.18■□□□□ 0.98
KRT39Q6A163 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT39Q6A163 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
KRT39Q6A163 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.17■□□□□ 0.98
KRT39Q6A163 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.17■□□□□ 0.98
KRT39Q6A163 AC233263.1-201ENST00000578059 224 ntBASIC21.17■□□□□ 0.98
KRT39Q6A163 MTDHP1-201ENST00000605323 784 ntBASIC21.17■□□□□ 0.98
KRT39Q6A163 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.17■□□□□ 0.98
KRT39Q6A163 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms