Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
KRT40Q6A162 AC116562.4-201ENST00000641316 2276 ntBASIC22.74■■□□□ 1.23
KRT40Q6A162 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC22.74■■□□□ 1.23
KRT40Q6A162 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
KRT40Q6A162 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC22.73■■□□□ 1.23
KRT40Q6A162 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC22.73■■□□□ 1.23
KRT40Q6A162 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
KRT40Q6A162 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC22.73■■□□□ 1.23
KRT40Q6A162 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
KRT40Q6A162 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC22.73■■□□□ 1.23
KRT40Q6A162 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC22.73■■□□□ 1.23
KRT40Q6A162 OR2A1-AS1-207ENST00000486094 819 ntBASIC22.73■■□□□ 1.23
KRT40Q6A162 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC22.73■■□□□ 1.23
KRT40Q6A162 AP003097.1-201ENST00000530657 1135 ntBASIC22.73■■□□□ 1.23
KRT40Q6A162 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC22.73■■□□□ 1.23
KRT40Q6A162 AC010331.1-201ENST00000611423 582 ntBASIC22.73■■□□□ 1.23
KRT40Q6A162 AL359736.2-201ENST00000621992 437 ntBASIC22.73■■□□□ 1.23
KRT40Q6A162 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC22.73■■□□□ 1.23
KRT40Q6A162 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
KRT40Q6A162 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
KRT40Q6A162 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
KRT40Q6A162 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC22.72■■□□□ 1.23
KRT40Q6A162 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC22.72■■□□□ 1.23
KRT40Q6A162 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
KRT40Q6A162 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
KRT40Q6A162 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC22.72■■□□□ 1.23
KRT40Q6A162 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC22.72■■□□□ 1.23
KRT40Q6A162 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC22.72■■□□□ 1.23
KRT40Q6A162 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
KRT40Q6A162 FAM210CP-201ENST00000445714 574 ntBASIC22.72■■□□□ 1.23
KRT40Q6A162 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC22.72■■□□□ 1.23
KRT40Q6A162 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC22.72■■□□□ 1.23
KRT40Q6A162 KLF2-202ENST00000592003 564 ntTSL 3 BASIC22.72■■□□□ 1.23
KRT40Q6A162 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
KRT40Q6A162 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC22.72■■□□□ 1.23
KRT40Q6A162 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC22.72■■□□□ 1.23
KRT40Q6A162 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
KRT40Q6A162 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
KRT40Q6A162 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
KRT40Q6A162 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
KRT40Q6A162 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
KRT40Q6A162 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
KRT40Q6A162 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
KRT40Q6A162 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
KRT40Q6A162 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
KRT40Q6A162 AC211429.1-201ENST00000415277 523 ntBASIC22.71■■□□□ 1.23
KRT40Q6A162 GXYLT1P3-201ENST00000453058 1193 ntBASIC22.71■■□□□ 1.23
KRT40Q6A162 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC22.71■■□□□ 1.23
KRT40Q6A162 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
KRT40Q6A162 SOX15-203ENST00000570788 1093 ntBASIC22.71■■□□□ 1.23
KRT40Q6A162 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC22.71■■□□□ 1.23
KRT40Q6A162 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC22.71■■□□□ 1.23
KRT40Q6A162 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
KRT40Q6A162 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
KRT40Q6A162 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC22.71■■□□□ 1.23
KRT40Q6A162 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
KRT40Q6A162 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
KRT40Q6A162 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
KRT40Q6A162 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
KRT40Q6A162 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC22.71■■□□□ 1.23
KRT40Q6A162 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
KRT40Q6A162 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.23
KRT40Q6A162 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC22.7■■□□□ 1.22
KRT40Q6A162 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
KRT40Q6A162 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
KRT40Q6A162 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC22.7■■□□□ 1.22
KRT40Q6A162 UBE2SP1-201ENST00000450587 669 ntBASIC22.7■■□□□ 1.22
KRT40Q6A162 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC22.7■■□□□ 1.22
KRT40Q6A162 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC22.7■■□□□ 1.22
KRT40Q6A162 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC22.7■■□□□ 1.22
KRT40Q6A162 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC22.7■■□□□ 1.22
KRT40Q6A162 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC22.7■■□□□ 1.22
KRT40Q6A162 AC073912.3-201ENST00000624414 853 ntBASIC22.7■■□□□ 1.22
KRT40Q6A162 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC22.7■■□□□ 1.22
KRT40Q6A162 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC22.7■■□□□ 1.22
KRT40Q6A162 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC22.7■■□□□ 1.22
KRT40Q6A162 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC22.7■■□□□ 1.22
KRT40Q6A162 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
KRT40Q6A162 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
KRT40Q6A162 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
KRT40Q6A162 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
KRT40Q6A162 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
KRT40Q6A162 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
KRT40Q6A162 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
KRT40Q6A162 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC22.69■■□□□ 1.22
KRT40Q6A162 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
KRT40Q6A162 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms