Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 MIR6821-201ENST00000617625 74 ntBASIC18.85■□□□□ 0.61
RNF220Q5VTB9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 AC009113.1-201ENST00000570267 2443 ntBASIC18.85■□□□□ 0.61
RNF220Q5VTB9 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF220Q5VTB9 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 AC007322.3-201ENST00000426526 701 ntBASIC18.84■□□□□ 0.61
RNF220Q5VTB9 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 MIR2861-201ENST00000636310 90 ntBASIC18.84■□□□□ 0.61
RNF220Q5VTB9 MYCNOS-205ENST00000641950 531 ntBASIC18.84■□□□□ 0.61
RNF220Q5VTB9 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
RNF220Q5VTB9 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
RNF220Q5VTB9 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.83■□□□□ 0.61
RNF220Q5VTB9 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF220Q5VTB9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF220Q5VTB9 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF220Q5VTB9 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF220Q5VTB9 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.83■□□□□ 0.6
RNF220Q5VTB9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF220Q5VTB9 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.83■□□□□ 0.6
RNF220Q5VTB9 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.83■□□□□ 0.6
RNF220Q5VTB9 NTF6G-201ENST00000591094 616 ntBASIC18.83■□□□□ 0.6
RNF220Q5VTB9 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF220Q5VTB9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF220Q5VTB9 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF220Q5VTB9 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF220Q5VTB9 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF220Q5VTB9 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF220Q5VTB9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF220Q5VTB9 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms