Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC12.23□□□□□ -0.45
HSPG2P98160 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC12.23□□□□□ -0.45
HSPG2P98160 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
HSPG2P98160 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC12.23□□□□□ -0.45
HSPG2P98160 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 LINC01465-201ENST00000408887 1940 ntBASIC12.23□□□□□ -0.45
HSPG2P98160 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC12.23□□□□□ -0.45
HSPG2P98160 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC12.23□□□□□ -0.45
HSPG2P98160 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
HSPG2P98160 BX640515.1-201ENST00000617215 977 ntBASIC12.23□□□□□ -0.45
HSPG2P98160 AF228730.7-201ENST00000641842 219 ntBASIC12.23□□□□□ -0.45
HSPG2P98160 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HSPG2P98160 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC12.22□□□□□ -0.45
HSPG2P98160 TSSC2-201ENST00000450217 709 ntBASIC12.22□□□□□ -0.45
HSPG2P98160 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HSPG2P98160 NT5C-210ENST00000582160 860 ntTSL 2 BASIC12.22□□□□□ -0.45
HSPG2P98160 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HSPG2P98160 AL355385.1-201ENST00000606123 409 ntBASIC12.22□□□□□ -0.45
HSPG2P98160 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HSPG2P98160 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HSPG2P98160 KRT8P8-201ENST00000434750 1448 ntBASIC12.22□□□□□ -0.45
HSPG2P98160 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HSPG2P98160 AC131212.4-201ENST00000623606 975 ntBASIC12.22□□□□□ -0.45
HSPG2P98160 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HSPG2P98160 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HSPG2P98160 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC12.22□□□□□ -0.45
HSPG2P98160 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HSPG2P98160 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC12.22□□□□□ -0.45
HSPG2P98160 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC12.22□□□□□ -0.45
HSPG2P98160 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HSPG2P98160 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC12.21□□□□□ -0.45
HSPG2P98160 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC12.21□□□□□ -0.45
HSPG2P98160 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC12.21□□□□□ -0.45
HSPG2P98160 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
HSPG2P98160 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC12.21□□□□□ -0.45
HSPG2P98160 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
HSPG2P98160 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC12.21□□□□□ -0.45
HSPG2P98160 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HSPG2P98160 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
HSPG2P98160 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HSPG2P98160 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC12.21□□□□□ -0.46
HSPG2P98160 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
HSPG2P98160 NUS1P1-201ENST00000446295 882 ntBASIC12.21□□□□□ -0.46
HSPG2P98160 KRT16P4-201ENST00000453883 522 ntBASIC12.21□□□□□ -0.46
HSPG2P98160 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC12.21□□□□□ -0.46
HSPG2P98160 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC12.21□□□□□ -0.46
HSPG2P98160 AC011498.5-201ENST00000592027 486 ntBASIC12.21□□□□□ -0.46
HSPG2P98160 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HSPG2P98160 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC12.21□□□□□ -0.46
HSPG2P98160 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC12.21□□□□□ -0.46
HSPG2P98160 HBZP1-201ENST00000354915 429 ntBASIC12.21□□□□□ -0.46
HSPG2P98160 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.46
HSPG2P98160 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC12.21□□□□□ -0.46
HSPG2P98160 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HSPG2P98160 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC12.21□□□□□ -0.46
HSPG2P98160 AL121603.2-201ENST00000557373 2117 ntBASIC12.21□□□□□ -0.46
HSPG2P98160 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
HSPG2P98160 VPS51-217ENST00000639871 243 ntTSL 5 BASIC12.21□□□□□ -0.46
HSPG2P98160 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 AC018553.1-201ENST00000616682 1458 ntBASIC12.2□□□□□ -0.46
HSPG2P98160 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC12.2□□□□□ -0.46
HSPG2P98160 AKR1C7P-201ENST00000305623 895 ntBASIC12.2□□□□□ -0.46
HSPG2P98160 HLA-G-202ENST00000376815 851 ntBASIC12.2□□□□□ -0.46
HSPG2P98160 HLA-G-203ENST00000376818 1127 ntBASIC12.2□□□□□ -0.46
HSPG2P98160 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
HSPG2P98160 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC12.2□□□□□ -0.46
HSPG2P98160 IL9RP2-201ENST00000423948 1312 ntBASIC12.2□□□□□ -0.46
HSPG2P98160 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms