Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA1P55317 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA1P55317 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19■□□□□ 0.63
FOXA1P55317 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
FOXA1P55317 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19■□□□□ 0.63
FOXA1P55317 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19■□□□□ 0.63
FOXA1P55317 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA1P55317 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA1P55317 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
FOXA1P55317 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA1P55317 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA1P55317 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA1P55317 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19■□□□□ 0.63
FOXA1P55317 BX276092.2-201ENST00000417668 665 ntBASIC19■□□□□ 0.63
FOXA1P55317 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19■□□□□ 0.63
FOXA1P55317 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA1P55317 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19■□□□□ 0.63
FOXA1P55317 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19■□□□□ 0.63
FOXA1P55317 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA1P55317 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA1P55317 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19■□□□□ 0.63
FOXA1P55317 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19■□□□□ 0.63
FOXA1P55317 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
FOXA1P55317 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19■□□□□ 0.63
FOXA1P55317 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
FOXA1P55317 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
FOXA1P55317 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 MIR663A-201ENST00000385250 93 ntBASIC18.99■□□□□ 0.63
FOXA1P55317 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.99■□□□□ 0.63
FOXA1P55317 AF201337.1-201ENST00000520239 748 ntBASIC18.99■□□□□ 0.63
FOXA1P55317 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
FOXA1P55317 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.99■□□□□ 0.63
FOXA1P55317 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
FOXA1P55317 RAP2CP1-201ENST00000605103 478 ntBASIC18.99■□□□□ 0.63
FOXA1P55317 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.99■□□□□ 0.63
FOXA1P55317 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA1P55317 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.99■□□□□ 0.63
FOXA1P55317 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.99■□□□□ 0.63
FOXA1P55317 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.99■□□□□ 0.63
FOXA1P55317 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
FOXA1P55317 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
FOXA1P55317 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
FOXA1P55317 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
FOXA1P55317 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.98■□□□□ 0.63
FOXA1P55317 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.98■□□□□ 0.63
FOXA1P55317 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
FOXA1P55317 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.98■□□□□ 0.63
FOXA1P55317 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.98■□□□□ 0.63
FOXA1P55317 CROCCP5-201ENST00000436658 830 ntBASIC18.98■□□□□ 0.63
FOXA1P55317 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.98■□□□□ 0.63
FOXA1P55317 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.98■□□□□ 0.63
FOXA1P55317 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.98■□□□□ 0.63
FOXA1P55317 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.98■□□□□ 0.63
FOXA1P55317 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
FOXA1P55317 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.98■□□□□ 0.63
FOXA1P55317 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA1P55317 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
FOXA1P55317 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.97■□□□□ 0.63
FOXA1P55317 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.97■□□□□ 0.63
FOXA1P55317 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA1P55317 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA1P55317 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA1P55317 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA1P55317 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA1P55317 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA1P55317 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA1P55317 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.97■□□□□ 0.63
FOXA1P55317 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
FOXA1P55317 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA1P55317 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA1P55317 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.97■□□□□ 0.63
FOXA1P55317 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.97■□□□□ 0.63
FOXA1P55317 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.97■□□□□ 0.63
FOXA1P55317 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.97■□□□□ 0.63
FOXA1P55317 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.97■□□□□ 0.63
FOXA1P55317 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
FOXA1P55317 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA1P55317 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms