Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
EPHB3P54753 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
EPHB3P54753 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
EPHB3P54753 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.53■□□□□ 0.88
EPHB3P54753 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
EPHB3P54753 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
EPHB3P54753 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
EPHB3P54753 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.53■□□□□ 0.88
EPHB3P54753 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.53■□□□□ 0.88
EPHB3P54753 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.53■□□□□ 0.88
EPHB3P54753 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.53■□□□□ 0.88
EPHB3P54753 AC097488.1-201ENST00000507834 756 ntBASIC20.53■□□□□ 0.88
EPHB3P54753 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.53■□□□□ 0.88
EPHB3P54753 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.53■□□□□ 0.88
EPHB3P54753 AC092865.7-201ENST00000641832 219 ntBASIC20.53■□□□□ 0.88
EPHB3P54753 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.53■□□□□ 0.88
EPHB3P54753 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.53■□□□□ 0.88
EPHB3P54753 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
EPHB3P54753 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
EPHB3P54753 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
EPHB3P54753 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
EPHB3P54753 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
EPHB3P54753 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
EPHB3P54753 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.53■□□□□ 0.88
EPHB3P54753 KRT8P8-201ENST00000434750 1448 ntBASIC20.53■□□□□ 0.88
EPHB3P54753 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
EPHB3P54753 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
EPHB3P54753 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EPHB3P54753 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.52■□□□□ 0.88
EPHB3P54753 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EPHB3P54753 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
EPHB3P54753 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EPHB3P54753 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.52■□□□□ 0.88
EPHB3P54753 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EPHB3P54753 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
EPHB3P54753 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EPHB3P54753 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
EPHB3P54753 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.52■□□□□ 0.88
EPHB3P54753 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.52■□□□□ 0.88
EPHB3P54753 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.52■□□□□ 0.88
EPHB3P54753 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.52■□□□□ 0.88
EPHB3P54753 AP005242.2-201ENST00000580065 1175 ntBASIC20.52■□□□□ 0.88
EPHB3P54753 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EPHB3P54753 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EPHB3P54753 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.52■□□□□ 0.88
EPHB3P54753 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EPHB3P54753 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.52■□□□□ 0.88
EPHB3P54753 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
EPHB3P54753 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.52■□□□□ 0.88
EPHB3P54753 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
EPHB3P54753 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.52■□□□□ 0.87
EPHB3P54753 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
EPHB3P54753 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
EPHB3P54753 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
EPHB3P54753 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.51■□□□□ 0.87
EPHB3P54753 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.51■□□□□ 0.87
EPHB3P54753 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
EPHB3P54753 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.51■□□□□ 0.87
EPHB3P54753 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.51■□□□□ 0.87
EPHB3P54753 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 AC005521.1-201ENST00000393351 872 ntBASIC20.51■□□□□ 0.87
EPHB3P54753 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
EPHB3P54753 CRYGFP-201ENST00000418459 633 ntBASIC20.51■□□□□ 0.87
EPHB3P54753 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.51■□□□□ 0.87
EPHB3P54753 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.51■□□□□ 0.87
EPHB3P54753 AC130371.2-201ENST00000619443 611 ntBASIC20.51■□□□□ 0.87
EPHB3P54753 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.51■□□□□ 0.87
EPHB3P54753 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 RCC2P6-201ENST00000526625 1557 ntBASIC20.51■□□□□ 0.87
EPHB3P54753 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
EPHB3P54753 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EPHB3P54753 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
EPHB3P54753 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
EPHB3P54753 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.5■□□□□ 0.87
EPHB3P54753 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.5■□□□□ 0.87
EPHB3P54753 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
EPHB3P54753 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
EPHB3P54753 AC113347.1-201ENST00000413321 391 ntBASIC20.5■□□□□ 0.87
EPHB3P54753 AC004951.3-201ENST00000418645 1148 ntBASIC20.5■□□□□ 0.87
EPHB3P54753 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.5■□□□□ 0.87
EPHB3P54753 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.5■□□□□ 0.87
EPHB3P54753 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.5■□□□□ 0.87
EPHB3P54753 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
EPHB3P54753 AC011298.2-201ENST00000617989 482 ntBASIC20.5■□□□□ 0.87
EPHB3P54753 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
EPHB3P54753 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
EPHB3P54753 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
EPHB3P54753 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.5■□□□□ 0.87
EPHB3P54753 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
EPHB3P54753 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms