Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A4P53420 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.09■□□□□ 0.97
COL4A4P53420 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.09■□□□□ 0.97
COL4A4P53420 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.09■□□□□ 0.97
COL4A4P53420 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.09■□□□□ 0.97
COL4A4P53420 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.09■□□□□ 0.97
COL4A4P53420 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC21.09■□□□□ 0.97
COL4A4P53420 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
COL4A4P53420 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
COL4A4P53420 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.09■□□□□ 0.97
COL4A4P53420 AC139887.4-201ENST00000607877 719 ntBASIC21.09■□□□□ 0.97
COL4A4P53420 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.09■□□□□ 0.97
COL4A4P53420 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.09■□□□□ 0.97
COL4A4P53420 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A4P53420 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
COL4A4P53420 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A4P53420 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.09■□□□□ 0.97
COL4A4P53420 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A4P53420 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A4P53420 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.09■□□□□ 0.97
COL4A4P53420 RCC2P6-201ENST00000526625 1557 ntBASIC21.09■□□□□ 0.97
COL4A4P53420 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.09■□□□□ 0.97
COL4A4P53420 AC092647.4-201ENST00000457211 535 ntBASIC21.09■□□□□ 0.97
COL4A4P53420 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.09■□□□□ 0.97
COL4A4P53420 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.09■□□□□ 0.97
COL4A4P53420 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.09■□□□□ 0.97
COL4A4P53420 AL121956.5-201ENST00000625261 221 ntBASIC21.09■□□□□ 0.97
COL4A4P53420 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
COL4A4P53420 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL4A4P53420 GABARAPL3-202ENST00000624044 1851 ntBASIC21.08■□□□□ 0.97
COL4A4P53420 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
COL4A4P53420 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL4A4P53420 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL4A4P53420 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.08■□□□□ 0.96
COL4A4P53420 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL4A4P53420 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL4A4P53420 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
COL4A4P53420 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL4A4P53420 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.08■□□□□ 0.96
COL4A4P53420 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.08■□□□□ 0.96
COL4A4P53420 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
COL4A4P53420 AL138966.2-201ENST00000621997 464 ntBASIC21.08■□□□□ 0.96
COL4A4P53420 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A4P53420 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A4P53420 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A4P53420 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A4P53420 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
COL4A4P53420 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.07■□□□□ 0.96
COL4A4P53420 FAM86EP-206ENST00000510506 987 ntBASIC21.07■□□□□ 0.96
COL4A4P53420 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.07■□□□□ 0.96
COL4A4P53420 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.07■□□□□ 0.96
COL4A4P53420 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A4P53420 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
COL4A4P53420 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A4P53420 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A4P53420 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A4P53420 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COL4A4P53420 AC012313.10-201ENST00000623509 926 ntBASIC21.06■□□□□ 0.96
COL4A4P53420 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COL4A4P53420 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COL4A4P53420 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.06■□□□□ 0.96
COL4A4P53420 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A4P53420 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A4P53420 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A4P53420 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
COL4A4P53420 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A4P53420 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A4P53420 IER3-202ENST00000376377 1350 ntBASIC21.06■□□□□ 0.96
COL4A4P53420 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A4P53420 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A4P53420 RNF152P1-201ENST00000397754 604 ntBASIC21.05■□□□□ 0.96
COL4A4P53420 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A4P53420 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A4P53420 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A4P53420 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.05■□□□□ 0.96
COL4A4P53420 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.05■□□□□ 0.96
COL4A4P53420 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.05■□□□□ 0.96
COL4A4P53420 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A4P53420 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A4P53420 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A4P53420 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A4P53420 AC096733.2-201ENST00000609937 1394 ntBASIC21.05■□□□□ 0.96
COL4A4P53420 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
COL4A4P53420 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A4P53420 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A4P53420 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A4P53420 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A4P53420 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A4P53420 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A4P53420 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A4P53420 MFAP1P1-201ENST00000442257 1255 ntBASIC21.05■□□□□ 0.96
COL4A4P53420 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A4P53420 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.05■□□□□ 0.96
COL4A4P53420 CLEC4GP1-201ENST00000596555 870 ntBASIC21.05■□□□□ 0.96
COL4A4P53420 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A4P53420 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.05■□□□□ 0.96
COL4A4P53420 FEM1AP1-201ENST00000431297 1995 ntBASIC21.05■□□□□ 0.96
COL4A4P53420 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A4P53420 KRT8P20-201ENST00000423953 1409 ntBASIC21.05■□□□□ 0.96
COL4A4P53420 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms