Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC116407.4-201ENST00000623319 1061 ntBASIC19.62■□□□□ 0.73
CXCL12P48061 AL023973.1-201ENST00000624619 620 ntBASIC19.62■□□□□ 0.73
CXCL12P48061 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.62■□□□□ 0.73
CXCL12P48061 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.62■□□□□ 0.73
CXCL12P48061 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CXCL12P48061 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CXCL12P48061 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CXCL12P48061 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CXCL12P48061 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CXCL12P48061 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.62■□□□□ 0.73
CXCL12P48061 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CXCL12P48061 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.62■□□□□ 0.73
CXCL12P48061 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CXCL12P48061 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.61■□□□□ 0.73
CXCL12P48061 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CXCL12P48061 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.61■□□□□ 0.73
CXCL12P48061 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.61■□□□□ 0.73
CXCL12P48061 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CXCL12P48061 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CXCL12P48061 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CXCL12P48061 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
CXCL12P48061 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.61■□□□□ 0.73
CXCL12P48061 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.61■□□□□ 0.73
CXCL12P48061 CA15P1-201ENST00000481698 905 ntBASIC19.61■□□□□ 0.73
CXCL12P48061 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
CXCL12P48061 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.61■□□□□ 0.73
CXCL12P48061 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CXCL12P48061 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.61■□□□□ 0.73
CXCL12P48061 AL441883.1-201ENST00000566170 1045 ntBASIC19.61■□□□□ 0.73
CXCL12P48061 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.61■□□□□ 0.73
CXCL12P48061 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
CXCL12P48061 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.61■□□□□ 0.73
CXCL12P48061 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.61■□□□□ 0.73
CXCL12P48061 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CXCL12P48061 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CXCL12P48061 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.61■□□□□ 0.73
CXCL12P48061 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CXCL12P48061 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CXCL12P48061 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CXCL12P48061 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CXCL12P48061 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.61■□□□□ 0.73
CXCL12P48061 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL12P48061 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL12P48061 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.6■□□□□ 0.73
CXCL12P48061 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL12P48061 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CXCL12P48061 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL12P48061 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
CXCL12P48061 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.6■□□□□ 0.73
CXCL12P48061 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.6■□□□□ 0.73
CXCL12P48061 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL12P48061 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL12P48061 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.6■□□□□ 0.73
CXCL12P48061 PRSS44-201ENST00000515154 1146 ntBASIC19.6■□□□□ 0.73
CXCL12P48061 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL12P48061 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.6■□□□□ 0.73
CXCL12P48061 AC069148.1-201ENST00000608741 768 ntBASIC19.6■□□□□ 0.73
CXCL12P48061 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.6■□□□□ 0.73
CXCL12P48061 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.6■□□□□ 0.73
CXCL12P48061 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL12P48061 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL12P48061 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL12P48061 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CXCL12P48061 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.59■□□□□ 0.73
CXCL12P48061 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CXCL12P48061 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CXCL12P48061 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CXCL12P48061 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CXCL12P48061 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.59■□□□□ 0.73
CXCL12P48061 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.59■□□□□ 0.73
CXCL12P48061 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.59■□□□□ 0.73
CXCL12P48061 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.59■□□□□ 0.73
CXCL12P48061 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.59■□□□□ 0.73
CXCL12P48061 CLEC4GP1-201ENST00000596555 870 ntBASIC19.59■□□□□ 0.73
CXCL12P48061 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.59■□□□□ 0.73
CXCL12P48061 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CXCL12P48061 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.59■□□□□ 0.73
CXCL12P48061 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.59■□□□□ 0.73
CXCL12P48061 AC008622.2-201ENST00000617006 1229 ntBASIC19.59■□□□□ 0.73
CXCL12P48061 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.59■□□□□ 0.73
CXCL12P48061 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.59■□□□□ 0.73
CXCL12P48061 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CXCL12P48061 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.59■□□□□ 0.73
CXCL12P48061 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
CXCL12P48061 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CXCL12P48061 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CXCL12P48061 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CXCL12P48061 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.58■□□□□ 0.73
CXCL12P48061 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.58■□□□□ 0.72
CXCL12P48061 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.58■□□□□ 0.72
CXCL12P48061 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.58■□□□□ 0.72
CXCL12P48061 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CXCL12P48061 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.58■□□□□ 0.72
CXCL12P48061 TMEM179-206ENST00000616017 1645 ntBASIC19.58■□□□□ 0.72
CXCL12P48061 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CXCL12P48061 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CXCL12P48061 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.57■□□□□ 0.72
CXCL12P48061 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.57■□□□□ 0.72
CXCL12P48061 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CXCL12P48061 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms