Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MSH3P20585 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
MSH3P20585 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
MSH3P20585 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
MSH3P20585 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
MSH3P20585 MTDHP1-201ENST00000605323 784 ntBASIC19.53■□□□□ 0.72
MSH3P20585 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.53■□□□□ 0.72
MSH3P20585 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.53■□□□□ 0.72
MSH3P20585 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
MSH3P20585 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH3P20585 TFP1-202ENST00000475455 1573 ntBASIC19.53■□□□□ 0.72
MSH3P20585 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH3P20585 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH3P20585 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MSH3P20585 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.52■□□□□ 0.72
MSH3P20585 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH3P20585 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.52■□□□□ 0.72
MSH3P20585 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.52■□□□□ 0.72
MSH3P20585 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.52■□□□□ 0.72
MSH3P20585 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.52■□□□□ 0.72
MSH3P20585 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.52■□□□□ 0.72
MSH3P20585 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.52■□□□□ 0.72
MSH3P20585 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH3P20585 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MSH3P20585 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH3P20585 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH3P20585 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
MSH3P20585 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
MSH3P20585 AC009237.14-201ENST00000609975 1594 ntBASIC19.52■□□□□ 0.71
MSH3P20585 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
MSH3P20585 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
MSH3P20585 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.52■□□□□ 0.71
MSH3P20585 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.52■□□□□ 0.71
MSH3P20585 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
MSH3P20585 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.52■□□□□ 0.71
MSH3P20585 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
MSH3P20585 TMEM179-206ENST00000616017 1645 ntBASIC19.51■□□□□ 0.71
MSH3P20585 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.51■□□□□ 0.71
MSH3P20585 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.51■□□□□ 0.71
MSH3P20585 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.51■□□□□ 0.71
MSH3P20585 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.51■□□□□ 0.71
MSH3P20585 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.51■□□□□ 0.71
MSH3P20585 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
MSH3P20585 RN7SL471P-201ENST00000580476 299 ntBASIC19.51■□□□□ 0.71
MSH3P20585 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.51■□□□□ 0.71
MSH3P20585 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
MSH3P20585 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.51■□□□□ 0.71
MSH3P20585 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
MSH3P20585 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.51■□□□□ 0.71
MSH3P20585 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.51■□□□□ 0.71
MSH3P20585 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH3P20585 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.5■□□□□ 0.71
MSH3P20585 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
MSH3P20585 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSH3P20585 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
MSH3P20585 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSH3P20585 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
MSH3P20585 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
MSH3P20585 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSH3P20585 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.5■□□□□ 0.71
MSH3P20585 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
MSH3P20585 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
MSH3P20585 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.5■□□□□ 0.71
MSH3P20585 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.5■□□□□ 0.71
MSH3P20585 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSH3P20585 AL023875.1-201ENST00000640777 796 ntBASIC19.5■□□□□ 0.71
MSH3P20585 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MSH3P20585 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.5■□□□□ 0.71
MSH3P20585 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MSH3P20585 AP006587.1-201ENST00000534129 1502 ntBASIC19.5■□□□□ 0.71
MSH3P20585 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
MSH3P20585 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.5■□□□□ 0.71
MSH3P20585 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
MSH3P20585 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MSH3P20585 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms