Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A3P12111 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.63■□□□□ 0.89
COL6A3P12111 AC098831.1-202ENST00000438821 336 ntBASIC20.62■□□□□ 0.89
COL6A3P12111 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A3P12111 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.62■□□□□ 0.89
COL6A3P12111 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.62■□□□□ 0.89
COL6A3P12111 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.62■□□□□ 0.89
COL6A3P12111 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
COL6A3P12111 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A3P12111 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A3P12111 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
COL6A3P12111 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.62■□□□□ 0.89
COL6A3P12111 AC106730.1-201ENST00000566722 1090 ntBASIC20.62■□□□□ 0.89
COL6A3P12111 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
COL6A3P12111 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A3P12111 AC011298.2-201ENST00000617989 482 ntBASIC20.62■□□□□ 0.89
COL6A3P12111 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A3P12111 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
COL6A3P12111 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A3P12111 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.62■□□□□ 0.89
COL6A3P12111 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A3P12111 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
COL6A3P12111 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A3P12111 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A3P12111 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A3P12111 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A3P12111 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.62■□□□□ 0.89
COL6A3P12111 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.62■□□□□ 0.89
COL6A3P12111 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.62■□□□□ 0.89
COL6A3P12111 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A3P12111 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A3P12111 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.61■□□□□ 0.89
COL6A3P12111 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.61■□□□□ 0.89
COL6A3P12111 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.61■□□□□ 0.89
COL6A3P12111 RNPS1P1-201ENST00000507437 918 ntBASIC20.61■□□□□ 0.89
COL6A3P12111 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.61■□□□□ 0.89
COL6A3P12111 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.61■□□□□ 0.89
COL6A3P12111 AC239800.4-201ENST00000603712 296 ntBASIC20.61■□□□□ 0.89
COL6A3P12111 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.61■□□□□ 0.89
COL6A3P12111 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A3P12111 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A3P12111 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.6■□□□□ 0.89
COL6A3P12111 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.6■□□□□ 0.89
COL6A3P12111 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A3P12111 SART3-203ENST00000546611 1184 ntBASIC20.6■□□□□ 0.89
COL6A3P12111 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
COL6A3P12111 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.6■□□□□ 0.89
COL6A3P12111 TERC-201ENST00000602385 541 ntBASIC20.6■□□□□ 0.89
COL6A3P12111 AL773604.1-201ENST00000617417 272 ntBASIC20.6■□□□□ 0.89
COL6A3P12111 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
COL6A3P12111 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A3P12111 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A3P12111 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A3P12111 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A3P12111 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.6■□□□□ 0.89
COL6A3P12111 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.6■□□□□ 0.89
COL6A3P12111 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.6■□□□□ 0.89
COL6A3P12111 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A3P12111 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A3P12111 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.59■□□□□ 0.89
COL6A3P12111 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A3P12111 SAPCD2P3-201ENST00000455031 850 ntBASIC20.59■□□□□ 0.89
COL6A3P12111 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.59■□□□□ 0.89
COL6A3P12111 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A3P12111 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.59■□□□□ 0.89
COL6A3P12111 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A3P12111 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL6A3P12111 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.59■□□□□ 0.89
COL6A3P12111 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.59■□□□□ 0.89
COL6A3P12111 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
COL6A3P12111 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.59■□□□□ 0.89
COL6A3P12111 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.59■□□□□ 0.89
COL6A3P12111 AL353801.3-201ENST00000609898 542 ntBASIC20.59■□□□□ 0.89
COL6A3P12111 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.59■□□□□ 0.89
COL6A3P12111 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.59■□□□□ 0.89
COL6A3P12111 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.59■□□□□ 0.89
COL6A3P12111 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A3P12111 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.59■□□□□ 0.89
COL6A3P12111 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A3P12111 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A3P12111 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
COL6A3P12111 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.58■□□□□ 0.89
COL6A3P12111 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
COL6A3P12111 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
COL6A3P12111 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
COL6A3P12111 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
COL6A3P12111 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL6A3P12111 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.58■□□□□ 0.89
COL6A3P12111 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.58■□□□□ 0.89
COL6A3P12111 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL6A3P12111 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.58■□□□□ 0.89
COL6A3P12111 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.58■□□□□ 0.89
COL6A3P12111 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.58■□□□□ 0.88
COL6A3P12111 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL6A3P12111 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
COL6A3P12111 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
COL6A3P12111 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL6A3P12111 KRT8P36-201ENST00000489121 1440 ntBASIC20.58■□□□□ 0.88
COL6A3P12111 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
COL6A3P12111 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms