Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.17■□□□□ 0.66
GFRA3O60609 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA3O60609 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.17■□□□□ 0.66
GFRA3O60609 HLA-A-209ENST00000638375 975 ntBASIC19.17■□□□□ 0.66
GFRA3O60609 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA3O60609 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA3O60609 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
GFRA3O60609 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA3O60609 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA3O60609 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA3O60609 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.17■□□□□ 0.66
GFRA3O60609 KRT8P20-201ENST00000423953 1409 ntBASIC19.17■□□□□ 0.66
GFRA3O60609 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA3O60609 KRT8P36-201ENST00000489121 1440 ntBASIC19.17■□□□□ 0.66
GFRA3O60609 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.16■□□□□ 0.66
GFRA3O60609 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.16■□□□□ 0.66
GFRA3O60609 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 KRT16P4-201ENST00000453883 522 ntBASIC19.16■□□□□ 0.66
GFRA3O60609 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.16■□□□□ 0.66
GFRA3O60609 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.16■□□□□ 0.66
GFRA3O60609 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.16■□□□□ 0.66
GFRA3O60609 AP001005.1-201ENST00000571755 1248 ntBASIC19.16■□□□□ 0.66
GFRA3O60609 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.16■□□□□ 0.66
GFRA3O60609 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
GFRA3O60609 AC140113.2-201ENST00000604370 208 ntBASIC19.16■□□□□ 0.66
GFRA3O60609 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.16■□□□□ 0.66
GFRA3O60609 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
GFRA3O60609 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA3O60609 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA3O60609 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA3O60609 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA3O60609 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.15■□□□□ 0.66
GFRA3O60609 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.15■□□□□ 0.66
GFRA3O60609 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.15■□□□□ 0.66
GFRA3O60609 CHCHD2P8-201ENST00000429873 447 ntBASIC19.15■□□□□ 0.66
GFRA3O60609 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA3O60609 KRT8P26-201ENST00000534154 1276 ntBASIC19.15■□□□□ 0.66
GFRA3O60609 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.15■□□□□ 0.66
GFRA3O60609 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.15■□□□□ 0.66
GFRA3O60609 TERC-201ENST00000602385 541 ntBASIC19.15■□□□□ 0.66
GFRA3O60609 AC064862.7-201ENST00000604520 867 ntBASIC19.15■□□□□ 0.66
GFRA3O60609 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.15■□□□□ 0.66
GFRA3O60609 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA3O60609 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA3O60609 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA3O60609 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA3O60609 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA3O60609 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.15■□□□□ 0.66
GFRA3O60609 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
GFRA3O60609 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
GFRA3O60609 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.14■□□□□ 0.65
GFRA3O60609 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
GFRA3O60609 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.14■□□□□ 0.65
GFRA3O60609 LINC00265-3P-201ENST00000447588 903 ntBASIC19.14■□□□□ 0.65
GFRA3O60609 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.14■□□□□ 0.65
GFRA3O60609 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.14■□□□□ 0.65
GFRA3O60609 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC19.14■□□□□ 0.65
GFRA3O60609 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.14■□□□□ 0.65
GFRA3O60609 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
GFRA3O60609 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.14■□□□□ 0.65
GFRA3O60609 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA3O60609 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
GFRA3O60609 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
GFRA3O60609 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
GFRA3O60609 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
GFRA3O60609 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.13■□□□□ 0.65
GFRA3O60609 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.13■□□□□ 0.65
GFRA3O60609 AC092597.1-201ENST00000487352 616 ntBASIC19.13■□□□□ 0.65
GFRA3O60609 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.13■□□□□ 0.65
GFRA3O60609 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
GFRA3O60609 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
GFRA3O60609 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
GFRA3O60609 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
GFRA3O60609 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
GFRA3O60609 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
GFRA3O60609 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
GFRA3O60609 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
GFRA3O60609 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms