Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.3■□□□□ 0.52
PRKNO60260 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.3■□□□□ 0.52
PRKNO60260 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PRKNO60260 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.29■□□□□ 0.52
PRKNO60260 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PRKNO60260 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PRKNO60260 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PRKNO60260 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PRKNO60260 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.29■□□□□ 0.52
PRKNO60260 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.29■□□□□ 0.52
PRKNO60260 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PRKNO60260 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.29■□□□□ 0.52
PRKNO60260 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.29■□□□□ 0.52
PRKNO60260 AP006294.2-201ENST00000641667 209 ntBASIC18.29■□□□□ 0.52
PRKNO60260 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PRKNO60260 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
PRKNO60260 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PRKNO60260 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PRKNO60260 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PRKNO60260 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PRKNO60260 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.29■□□□□ 0.52
PRKNO60260 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PRKNO60260 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.28■□□□□ 0.52
PRKNO60260 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PRKNO60260 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PRKNO60260 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
PRKNO60260 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.28■□□□□ 0.52
PRKNO60260 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
PRKNO60260 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
PRKNO60260 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.28■□□□□ 0.52
PRKNO60260 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
PRKNO60260 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.28■□□□□ 0.52
PRKNO60260 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.28■□□□□ 0.52
PRKNO60260 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.28■□□□□ 0.52
PRKNO60260 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.28■□□□□ 0.52
PRKNO60260 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKNO60260 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.27■□□□□ 0.52
PRKNO60260 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.27■□□□□ 0.52
PRKNO60260 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.27■□□□□ 0.52
PRKNO60260 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PRKNO60260 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.27■□□□□ 0.52
PRKNO60260 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.27■□□□□ 0.52
PRKNO60260 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PRKNO60260 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
PRKNO60260 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PRKNO60260 RPS2P4-201ENST00000476944 856 ntBASIC18.27■□□□□ 0.52
PRKNO60260 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PRKNO60260 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PRKNO60260 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
PRKNO60260 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PRKNO60260 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
PRKNO60260 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
PRKNO60260 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.51
PRKNO60260 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.26■□□□□ 0.51
PRKNO60260 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.26■□□□□ 0.51
PRKNO60260 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.26■□□□□ 0.51
PRKNO60260 AC125437.2-201ENST00000625180 2167 ntBASIC18.26■□□□□ 0.51
PRKNO60260 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.26■□□□□ 0.51
PRKNO60260 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PRKNO60260 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.26■□□□□ 0.51
PRKNO60260 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.26■□□□□ 0.51
PRKNO60260 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.26■□□□□ 0.51
PRKNO60260 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.26■□□□□ 0.51
PRKNO60260 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
PRKNO60260 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKNO60260 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.26■□□□□ 0.51
PRKNO60260 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms