Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
UBFD1O14562 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.06■□□□□ 0.64
UBFD1O14562 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
UBFD1O14562 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
UBFD1O14562 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
UBFD1O14562 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
UBFD1O14562 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
UBFD1O14562 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.05■□□□□ 0.64
UBFD1O14562 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.05■□□□□ 0.64
UBFD1O14562 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
UBFD1O14562 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.05■□□□□ 0.64
UBFD1O14562 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.05■□□□□ 0.64
UBFD1O14562 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
UBFD1O14562 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
UBFD1O14562 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
UBFD1O14562 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
UBFD1O14562 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
UBFD1O14562 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
UBFD1O14562 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.05■□□□□ 0.64
UBFD1O14562 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.05■□□□□ 0.64
UBFD1O14562 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.05■□□□□ 0.64
UBFD1O14562 AC080038.1-201ENST00000611274 1154 ntBASIC19.05■□□□□ 0.64
UBFD1O14562 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
UBFD1O14562 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
UBFD1O14562 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
UBFD1O14562 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
UBFD1O14562 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
UBFD1O14562 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.05■□□□□ 0.64
UBFD1O14562 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.04■□□□□ 0.64
UBFD1O14562 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.04■□□□□ 0.64
UBFD1O14562 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
UBFD1O14562 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 CDCA4P2-201ENST00000441182 718 ntBASIC19.04■□□□□ 0.64
UBFD1O14562 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.04■□□□□ 0.64
UBFD1O14562 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.04■□□□□ 0.64
UBFD1O14562 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.04■□□□□ 0.64
UBFD1O14562 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.04■□□□□ 0.64
UBFD1O14562 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.04■□□□□ 0.64
UBFD1O14562 IKBKGP1-201ENST00000612193 1073 ntBASIC19.04■□□□□ 0.64
UBFD1O14562 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.04■□□□□ 0.64
UBFD1O14562 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.04■□□□□ 0.64
UBFD1O14562 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
UBFD1O14562 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.04■□□□□ 0.64
UBFD1O14562 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
UBFD1O14562 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
UBFD1O14562 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.03■□□□□ 0.64
UBFD1O14562 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
UBFD1O14562 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
UBFD1O14562 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
UBFD1O14562 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
UBFD1O14562 TFP1-202ENST00000475455 1573 ntBASIC19.03■□□□□ 0.64
UBFD1O14562 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
UBFD1O14562 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
UBFD1O14562 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.03■□□□□ 0.64
UBFD1O14562 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
UBFD1O14562 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.03■□□□□ 0.64
UBFD1O14562 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
UBFD1O14562 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
UBFD1O14562 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
UBFD1O14562 MKRN4P-201ENST00000444706 1521 ntBASIC19.03■□□□□ 0.64
UBFD1O14562 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
UBFD1O14562 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
UBFD1O14562 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
UBFD1O14562 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
UBFD1O14562 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.02■□□□□ 0.64
UBFD1O14562 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
UBFD1O14562 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
UBFD1O14562 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.02■□□□□ 0.64
UBFD1O14562 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
UBFD1O14562 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
UBFD1O14562 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.02■□□□□ 0.64
UBFD1O14562 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.02■□□□□ 0.64
UBFD1O14562 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.02■□□□□ 0.64
UBFD1O14562 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.02■□□□□ 0.64
UBFD1O14562 BX276092.2-201ENST00000417668 665 ntBASIC19.02■□□□□ 0.64
UBFD1O14562 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.02■□□□□ 0.64
UBFD1O14562 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.02■□□□□ 0.64
UBFD1O14562 AC105036.2-201ENST00000569468 176 ntBASIC19.02■□□□□ 0.64
UBFD1O14562 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.02■□□□□ 0.64
UBFD1O14562 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.02■□□□□ 0.64
UBFD1O14562 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
UBFD1O14562 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
UBFD1O14562 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
UBFD1O14562 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
UBFD1O14562 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
UBFD1O14562 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
UBFD1O14562 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.02■□□□□ 0.63
UBFD1O14562 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms