Protein–RNA interactions for Protein: A5YKK6

CNOT1, CCR4-NOT transcription complex subunit 1, humanhuman

Known RBP Predictions only

Length 2,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1A5YKK6 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CNOT1A5YKK6 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CNOT1A5YKK6 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CNOT1A5YKK6 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 KRT8P20-201ENST00000423953 1409 ntBASIC18.82■□□□□ 0.6
CNOT1A5YKK6 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 NEK4P2-201ENST00000580004 1012 ntBASIC18.82■□□□□ 0.6
CNOT1A5YKK6 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CNOT1A5YKK6 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 AC112907.2-201ENST00000448639 330 ntBASIC18.81■□□□□ 0.6
CNOT1A5YKK6 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 AC117500.6-201ENST00000624871 588 ntBASIC18.81■□□□□ 0.6
CNOT1A5YKK6 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 TFP1-202ENST00000475455 1573 ntBASIC18.81■□□□□ 0.6
CNOT1A5YKK6 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 HLA-G-202ENST00000376815 851 ntBASIC18.81■□□□□ 0.6
CNOT1A5YKK6 HLA-G-203ENST00000376818 1127 ntBASIC18.81■□□□□ 0.6
CNOT1A5YKK6 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 PRELID1P1-202ENST00000567272 903 ntBASIC18.81■□□□□ 0.6
CNOT1A5YKK6 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.81■□□□□ 0.6
CNOT1A5YKK6 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CNOT1A5YKK6 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CNOT1A5YKK6 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.8■□□□□ 0.6
CNOT1A5YKK6 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.8■□□□□ 0.6
CNOT1A5YKK6 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CNOT1A5YKK6 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CNOT1A5YKK6 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.8■□□□□ 0.6
CNOT1A5YKK6 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CNOT1A5YKK6 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CNOT1A5YKK6 AL121603.2-201ENST00000557373 2117 ntBASIC18.8■□□□□ 0.6
CNOT1A5YKK6 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CNOT1A5YKK6 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CNOT1A5YKK6 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 SPDYE13P-201ENST00000445314 798 ntBASIC18.79■□□□□ 0.6
CNOT1A5YKK6 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 AC092119.3-201ENST00000612618 583 ntBASIC18.79■□□□□ 0.6
CNOT1A5YKK6 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 SPDYE15P-201ENST00000424157 909 ntBASIC18.79■□□□□ 0.6
CNOT1A5YKK6 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNOT1A5YKK6 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 HLA-A-209ENST00000638375 975 ntBASIC18.78■□□□□ 0.6
CNOT1A5YKK6 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNOT1A5YKK6 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms