Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CYCSP2-201ENST00000558168 301 ntBASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 UBE2CP4-201ENST00000561405 535 ntBASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 AC005262.1-201ENST00000588562 362 ntBASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 AL162730.1-201ENST00000605734 292 ntBASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 AC243756.2-201ENST00000618406 463 ntBASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 AC019278.1-201ENST00000623516 479 ntBASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 AL132796.3-201ENST00000624703 900 ntBASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 AC005618.4-201ENST00000625053 554 ntBASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 AC010653.3-201ENST00000635332 232 ntBASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 AL136985.3-201ENST00000637377 2219 ntTSL 5 BASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 NEK10-201ENST00000295720 2871 ntTSL 2 BASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIMD1Q9UGP4 BTN2A1-201ENST00000312541 2920 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.12
LIMD1Q9UGP4 AP003471.1-202ENST00000319051 1988 ntBASIC8.02□□□□□ -1.12
LIMD1Q9UGP4 CD86-201ENST00000264468 2634 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.12
LIMD1Q9UGP4 DDX50P1-201ENST00000438163 2400 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 LINC00964-202ENST00000510897 3534 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 LINC01206-202ENST00000474045 2240 ntTSL 5 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 MTCO1P14-201ENST00000441695 1559 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 ANKS1B-215ENST00000549493 3328 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AL080317.3-201ENST00000607434 4315 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 PPP1R1C-202ENST00000409137 3004 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 LELP1-201ENST00000368747 523 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 SNORA30-201ENST00000384028 129 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 RNU6-878P-201ENST00000384578 110 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 PPP1R7-204ENST00000402734 883 ntTSL 3 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 RN7SKP108-201ENST00000411367 328 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC023141.10-201ENST00000415634 200 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 BOLA3P4-201ENST00000418151 400 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC009362.1-201ENST00000427253 406 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 NANOGP6-201ENST00000429190 847 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AL358934.1-201ENST00000432346 324 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC114755.4-201ENST00000439114 443 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AL121908.1-201ENST00000443055 668 ntTSL 4 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 MTND6P13-201ENST00000443510 523 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 SLC31A1P1-201ENST00000451221 567 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC108868.2-201ENST00000451464 511 ntTSL 2 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 RBMY2EP-202ENST00000456360 940 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 RPL35P6-201ENST00000490024 372 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC090638.1-201ENST00000498296 909 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 PANCR-202ENST00000513690 448 ntTSL 2 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 RNU6-583P-201ENST00000516012 92 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC027309.2-201ENST00000520566 192 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC008708.2-201ENST00000522956 1124 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC079384.1-201ENST00000548506 600 ntTSL 4 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 FDPSP3-201ENST00000556903 1013 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC023813.3-201ENST00000561876 539 ntTSL 3 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC018558.5-201ENST00000565840 952 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC141257.3-201ENST00000572906 215 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC005884.2-201ENST00000593107 247 ntTSL 5 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 OR5AH1P-201ENST00000595968 283 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AL161931.1-201ENST00000612768 246 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC008115.3-201ENST00000614874 549 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AC231657.1-201ENST00000624313 397 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 PISRT1-201ENST00000626175 531 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 LUZP1-202ENST00000314174 3715 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 MAP3K7CL-201ENST00000286791 1725 ntTSL 5 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 MS4A6A-203ENST00000426738 1736 ntTSL 5 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 DNAJC5G-203ENST00000404433 1647 ntAPPRIS P1 TSL 5 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 UTY-210ENST00000538878 6574 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 BTK-210ENST00000621635 2767 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 RBPJP6-201ENST00000411556 1431 ntBASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 VAMP3-201ENST00000054666 2205 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 XIRP2-202ENST00000409043 3292 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 CCDC39-201ENST00000442201 3279 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 ALG13-201ENST00000251943 3997 ntTSL 2 BASIC8.02□□□□□ -1.13
LIMD1Q9UGP4 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC8.01□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms