Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC3.73□□□□□ -1.81
PRKDCP78527 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC3.73□□□□□ -1.81
PRKDCP78527 CASC22-202ENST00000628396 802 ntTSL 5 BASIC3.73□□□□□ -1.81
PRKDCP78527 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC3.73□□□□□ -1.81
PRKDCP78527 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC3.73□□□□□ -1.81
PRKDCP78527 SAMMSON-226ENST00000642089 1582 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 ZEB2-236ENST00000636471 9583 ntTSL 5 BASIC3.73□□□□□ -1.81
PRKDCP78527 TRHDE-201ENST00000261180 10733 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC3.73□□□□□ -1.81
PRKDCP78527 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC3.73□□□□□ -1.81
PRKDCP78527 FNDC3A-206ENST00000541916 6328 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC3.73□□□□□ -1.81
PRKDCP78527 OR1L6-202ENST00000373684 1044 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC3.73□□□□□ -1.81
PRKDCP78527 RN7SL423P-201ENST00000486202 304 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC3.73□□□□□ -1.81
PRKDCP78527 AC091912.1-201ENST00000511351 248 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.73□□□□□ -1.81
PRKDCP78527 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC3.73□□□□□ -1.81
PRKDCP78527 SNX18P1Y-201ENST00000616231 511 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 PABPC1P8-201ENST00000452851 2086 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 PDE4DIP-219ENST00000524974 8305 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
PRKDCP78527 LAMA1-201ENST00000389658 9657 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 PEG10-208ENST00000615790 6394 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC3.73□□□□□ -1.81
PRKDCP78527 SPTBN1-207ENST00000615901 10226 ntTSL 5 BASIC3.73□□□□□ -1.81
PRKDCP78527 RPS3AP25-201ENST00000411660 793 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 AL451063.1-201ENST00000450164 1133 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 KCNMB3-205ENST00000485523 7246 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 RPS7P6-201ENST00000485777 579 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 SCARNA16.4-201ENST00000516956 187 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 MIR3939-201ENST00000582614 106 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
PRKDCP78527 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC3.73□□□□□ -1.81
PRKDCP78527 SMG1P7-201ENST00000565246 2704 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 HSPD1P7-201ENST00000447985 1686 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 AC068446.1-201ENST00000556425 1549 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PRKDCP78527 OR1D2-202ENST00000641064 4882 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
PRKDCP78527 RAD17P2-201ENST00000451754 1977 ntBASIC3.73□□□□□ -1.81
PRKDCP78527 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC3.72□□□□□ -1.81
PRKDCP78527 CD109-202ENST00000422508 9221 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC3.72□□□□□ -1.81
PRKDCP78527 SNORA9-201ENST00000384215 133 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 ATP5F1P2-201ENST00000398143 760 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 AL645608.4-201ENST00000423619 154 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 CBX1P1-201ENST00000440184 427 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.72□□□□□ -1.81
PRKDCP78527 AC058823.1-201ENST00000485315 474 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC3.72□□□□□ -1.81
PRKDCP78527 HNRNPRP2-201ENST00000528421 743 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 MIR132-201ENST00000591554 101 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.72□□□□□ -1.81
PRKDCP78527 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC3.72□□□□□ -1.81
PRKDCP78527 SPATA31C1-201ENST00000420021 3895 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC3.72□□□□□ -1.81
PRKDCP78527 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 AC104162.1-201ENST00000430831 2382 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 AC017104.4-201ENST00000636283 1592 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC3.72□□□□□ -1.81
PRKDCP78527 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC3.72□□□□□ -1.81
PRKDCP78527 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC3.72□□□□□ -1.81
PRKDCP78527 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC3.72□□□□□ -1.81
PRKDCP78527 AC063976.2-201ENST00000425667 3556 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.72□□□□□ -1.81
PRKDCP78527 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC3.72□□□□□ -1.81
PRKDCP78527 NANOGP9-201ENST00000439890 892 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
PRKDCP78527 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 AL008638.3-201ENST00000623027 5182 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 PIGP-202ENST00000360525 6998 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 MYO5A-205ENST00000399231 12225 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 AC003973.3-201ENST00000624863 2822 ntBASIC3.72□□□□□ -1.81
PRKDCP78527 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PRKDCP78527 PCNT-201ENST00000359568 10560 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 152.5 ms