Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 SEL1L3-201ENST00000264868 4369 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 LDAH-208ENST00000435420 3837 ntTSL 2 BASIC7.14□□□□□ -1.27
MSX1P28360 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC7.14□□□□□ -1.27
MSX1P28360 TMPPE-202ENST00000416695 3451 ntAPPRIS ALT2 TSL 2 BASIC7.14□□□□□ -1.27
MSX1P28360 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 PIBF1-208ENST00000617689 2882 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 WDR75-201ENST00000314761 2701 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 CAP1-201ENST00000340450 2592 ntAPPRIS ALT1 TSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 BCLAF1-223ENST00000628517 2512 ntTSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 SLC16A4-203ENST00000437429 2372 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 FAM49A-201ENST00000381323 4670 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
MSX1P28360 FAF2-201ENST00000261942 4515 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
MSX1P28360 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
MSX1P28360 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 LINC01132-201ENST00000437601 3793 ntTSL 4 BASIC7.13□□□□□ -1.27
MSX1P28360 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
MSX1P28360 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 ASNSP6-201ENST00000592770 1618 ntBASIC7.13□□□□□ -1.27
MSX1P28360 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 STAT2-202ENST00000418572 1548 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 EYA4-213ENST00000531901 2892 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 SULT1C2-202ENST00000326853 2828 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
MSX1P28360 CACYBP-209ENST00000613570 2835 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 KCNH7-202ENST00000332142 4113 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
MSX1P28360 ANKS1B-211ENST00000547776 3885 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
MSX1P28360 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
MSX1P28360 TTC9C-202ENST00000316461 1080 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
MSX1P28360 Y_RNA.216-201ENST00000364205 93 ntBASIC7.13□□□□□ -1.27
MSX1P28360 SNORD81.2-201ENST00000365153 76 ntBASIC7.13□□□□□ -1.27
MSX1P28360 IARS-201ENST00000375627 697 ntTSL 3 BASIC7.13□□□□□ -1.27
MSX1P28360 SNORA10-201ENST00000384084 133 ntBASIC7.13□□□□□ -1.27
MSX1P28360 MIR106B-201ENST00000385301 82 ntBASIC7.13□□□□□ -1.27
MSX1P28360 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
MSX1P28360 PKMP3-201ENST00000405497 715 ntBASIC7.13□□□□□ -1.27
MSX1P28360 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC7.13□□□□□ -1.27
MSX1P28360 AC009303.1-201ENST00000426307 352 ntBASIC7.13□□□□□ -1.27
MSX1P28360 OR52B5P-201ENST00000435337 951 ntBASIC7.13□□□□□ -1.27
MSX1P28360 RPL7P11-201ENST00000437586 658 ntBASIC7.13□□□□□ -1.27
MSX1P28360 ACTR3P2-201ENST00000439585 1257 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AC140076.1-201ENST00000449897 361 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC7.13□□□□□ -1.27
MSX1P28360 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC7.13□□□□□ -1.27
MSX1P28360 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC7.13□□□□□ -1.27
MSX1P28360 HSPE1P22-201ENST00000456856 327 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AL592464.2-201ENST00000457440 607 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 NDUFS5P2-201ENST00000484004 306 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AC012170.1-201ENST00000495139 359 ntBASIC7.13□□□□□ -1.27
MSX1P28360 RN7SL124P-201ENST00000498656 285 ntBASIC7.13□□□□□ -1.27
MSX1P28360 RN7SL388P-201ENST00000498736 339 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AC114300.1-201ENST00000502347 280 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 KLRA1P-201ENST00000503499 986 ntBASIC7.13□□□□□ -1.27
MSX1P28360 KCTD9P5-201ENST00000504141 1170 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AC026427.2-201ENST00000506228 536 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 AC083902.1-201ENST00000508578 359 ntTSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 AC008868.1-201ENST00000509786 737 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC7.13□□□□□ -1.27
MSX1P28360 AC010486.1-201ENST00000511793 424 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC7.13□□□□□ -1.27
MSX1P28360 RNU6-416P-201ENST00000516265 103 ntBASIC7.13□□□□□ -1.27
MSX1P28360 LINC00967-204ENST00000518412 271 ntTSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 TPT1-AS1-213ENST00000521336 759 ntTSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 IGJP1-201ENST00000522682 475 ntBASIC7.13□□□□□ -1.27
MSX1P28360 SDHCP4-201ENST00000532834 510 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AP003174.3-201ENST00000537926 516 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AC115676.1-201ENST00000538416 329 ntTSL 3 BASIC7.13□□□□□ -1.27
MSX1P28360 AL133304.1-201ENST00000548199 549 ntTSL 4 BASIC7.13□□□□□ -1.27
MSX1P28360 AL390334.1-201ENST00000556395 450 ntBASIC7.13□□□□□ -1.27
MSX1P28360 RN7SL473P-201ENST00000580341 299 ntBASIC7.13□□□□□ -1.27
MSX1P28360 AP005210.1-201ENST00000583659 544 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 AP005131.5-201ENST00000585817 498 ntTSL 3 BASIC7.13□□□□□ -1.27
MSX1P28360 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC7.13□□□□□ -1.27
MSX1P28360 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC7.13□□□□□ -1.27
MSX1P28360 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC7.13□□□□□ -1.27
MSX1P28360 AL109918.2-201ENST00000605188 279 ntBASIC7.13□□□□□ -1.27
MSX1P28360 NR1I3-235ENST00000628566 1201 ntTSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC7.13□□□□□ -1.27
MSX1P28360 RPL36AP21-202ENST00000639134 430 ntBASIC7.13□□□□□ -1.27
MSX1P28360 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 MTIF2-203ENST00000394600 2221 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 AL136985.3-201ENST00000637377 2219 ntTSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 TMC1-202ENST00000340019 3068 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 FOPNL-206ENST00000573968 2039 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 LOXHD1-201ENST00000300591 3970 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
MSX1P28360 TSC22D1-212ENST00000611198 2877 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 TSC22D1-213ENST00000622051 2872 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 ATM-215ENST00000530958 5718 ntTSL 2 BASIC7.13□□□□□ -1.27
MSX1P28360 NCAPH-201ENST00000240423 2763 ntAPPRIS P2 TSL 1 (best) BASIC7.13□□□□□ -1.27
MSX1P28360 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
MSX1P28360 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
MSX1P28360 PSG9-204ENST00000418820 1748 ntTSL 5 BASIC7.13□□□□□ -1.27
MSX1P28360 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 139.1 ms