Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 RNA5SP455-201ENST00000365190 119 ntBASIC6.52□□□□□ -1.37
COL4A1P02462 RNF10P1-201ENST00000418589 369 ntBASIC6.52□□□□□ -1.37
COL4A1P02462 AC093655.2-201ENST00000425735 631 ntBASIC6.52□□□□□ -1.37
COL4A1P02462 MGAT2P2-201ENST00000427194 797 ntBASIC6.52□□□□□ -1.37
COL4A1P02462 IGBP1P3-201ENST00000447449 1000 ntBASIC6.52□□□□□ -1.37
COL4A1P02462 AP000797.2-201ENST00000475768 606 ntBASIC6.52□□□□□ -1.37
COL4A1P02462 AC008897.1-201ENST00000494006 347 ntBASIC6.52□□□□□ -1.37
COL4A1P02462 ELOCP28-201ENST00000590044 317 ntBASIC6.52□□□□□ -1.37
COL4A1P02462 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
COL4A1P02462 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A1P02462 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A1P02462 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
COL4A1P02462 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A1P02462 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.51□□□□□ -1.37
COL4A1P02462 AC232271.1-201ENST00000602455 2715 ntBASIC6.51□□□□□ -1.37
COL4A1P02462 ZNF733P-202ENST00000444809 1573 ntBASIC6.51□□□□□ -1.37
COL4A1P02462 PCDH19-201ENST00000255531 7937 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A1P02462 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A1P02462 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A1P02462 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A1P02462 AL359955.1-201ENST00000455242 3275 ntBASIC6.51□□□□□ -1.37
COL4A1P02462 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
COL4A1P02462 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A1P02462 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A1P02462 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
COL4A1P02462 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A1P02462 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC6.51□□□□□ -1.37
COL4A1P02462 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC6.51□□□□□ -1.37
COL4A1P02462 MORF4L1P4-201ENST00000450245 976 ntBASIC6.51□□□□□ -1.37
COL4A1P02462 SNORD125-201ENST00000459538 96 ntBASIC6.51□□□□□ -1.37
COL4A1P02462 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A1P02462 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC6.51□□□□□ -1.37
COL4A1P02462 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A1P02462 AC009117.1-201ENST00000563948 554 ntBASIC6.51□□□□□ -1.37
COL4A1P02462 AC011447.4-201ENST00000587562 111 ntBASIC6.51□□□□□ -1.37
COL4A1P02462 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A1P02462 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A1P02462 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
COL4A1P02462 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A1P02462 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.5□□□□□ -1.37
COL4A1P02462 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.5□□□□□ -1.37
COL4A1P02462 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC6.5□□□□□ -1.37
COL4A1P02462 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC6.5□□□□□ -1.37
COL4A1P02462 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.5□□□□□ -1.37
COL4A1P02462 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A1P02462 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC6.5□□□□□ -1.37
COL4A1P02462 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A1P02462 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A1P02462 RPS4XP16-201ENST00000427198 791 ntBASIC6.5□□□□□ -1.37
COL4A1P02462 BX323845.1-201ENST00000432417 179 ntBASIC6.5□□□□□ -1.37
COL4A1P02462 RPS11P7-201ENST00000442125 465 ntBASIC6.5□□□□□ -1.37
COL4A1P02462 LINC02210-201ENST00000444561 288 ntBASIC6.5□□□□□ -1.37
COL4A1P02462 AC097484.1-201ENST00000471148 389 ntBASIC6.5□□□□□ -1.37
COL4A1P02462 RN7SL459P-201ENST00000481078 302 ntBASIC6.5□□□□□ -1.37
COL4A1P02462 RPS4XP20-201ENST00000505751 772 ntBASIC6.5□□□□□ -1.37
COL4A1P02462 CR383656.6-201ENST00000550518 394 ntBASIC6.5□□□□□ -1.37
COL4A1P02462 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC6.5□□□□□ -1.37
COL4A1P02462 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC6.5□□□□□ -1.37
COL4A1P02462 AL133406.3-201ENST00000606817 541 ntBASIC6.5□□□□□ -1.37
COL4A1P02462 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A1P02462 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.5□□□□□ -1.37
COL4A1P02462 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.5□□□□□ -1.37
COL4A1P02462 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A1P02462 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC6.5□□□□□ -1.37
COL4A1P02462 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A1P02462 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A1P02462 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.5□□□□□ -1.37
COL4A1P02462 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A1P02462 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A1P02462 ZNF385D-201ENST00000281523 10699 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A1P02462 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A1P02462 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A1P02462 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A1P02462 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
COL4A1P02462 CASC19-221ENST00000641309 1382 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 AL353625.1-202ENST00000366273 571 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 U3.28-201ENST00000391249 210 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 DNAJA1P3-201ENST00000399417 1194 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC6.49□□□□□ -1.37
COL4A1P02462 HMGB1P32-201ENST00000425971 565 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 TEX41-205ENST00000431734 529 ntTSL 4 BASIC6.49□□□□□ -1.37
COL4A1P02462 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A1P02462 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A1P02462 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.49□□□□□ -1.37
COL4A1P02462 RPL36AP15-201ENST00000444514 266 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC6.49□□□□□ -1.37
COL4A1P02462 BTF3P13-201ENST00000513224 490 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 AL671862.1-201ENST00000515851 349 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 BRD9P1-201ENST00000529855 560 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 MIR4330-201ENST00000579077 105 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 MEMO1P5-201ENST00000604810 406 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A1P02462 AC112694.2-201ENST00000623697 768 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A1P02462 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A1P02462 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A1P02462 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
COL4A1P02462 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A1P02462 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.49□□□□□ -1.37
COL4A1P02462 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 464.9 ms