Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC125494.2-201ENST00000602431 657 ntBASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC092944.2-201ENST00000605443 889 ntBASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 AL390318.1-201ENST00000624564 687 ntBASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 AP002512.4-202ENST00000641599 4530 ntBASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
TMX2-CTNND1H3BSU7 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 SNORA74A-201ENST00000364089 198 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 SNORA5.1-201ENST00000384275 131 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 GAPDHP42-201ENST00000406848 981 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 RNU4-34P-201ENST00000410431 124 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 RN7SKP278-201ENST00000410504 342 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AL596448.1-201ENST00000415024 392 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC113412.1-201ENST00000425840 504 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC023141.8-201ENST00000442554 208 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC015720.2-201ENST00000567709 334 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 MIR6837-201ENST00000620884 64 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 MIR6730-201ENST00000622213 67 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC004808.2-201ENST00000627965 773 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 LINC01963-201ENST00000562038 3148 ntBASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
TMX2-CTNND1H3BSU7 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 SETP9-201ENST00000423837 832 ntBASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 FRG2FP-204ENST00000453982 852 ntBASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 RNU1-88P-201ENST00000459274 128 ntBASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC090602.1-201ENST00000469695 252 ntBASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC087672.1-201ENST00000479876 766 ntBASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 RPSAP51-201ENST00000497462 645 ntBASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC074255.1-201ENST00000511259 501 ntBASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC021766.1-201ENST00000624404 741 ntBASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 AC069542.2-201ENST00000624816 216 ntBASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms