Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL035461.2-201ENST00000619201 524 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC027506.1-201ENST00000621395 198 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC091932.2-201ENST00000623014 291 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC005355.2-201ENST00000625064 484 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 CASC19-281ENST00000642118 1554 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 CR383656.5-201ENST00000547616 1340 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 SNORA38B-201ENST00000363524 131 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 RNA5SP442-201ENST00000365050 107 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 RNU6-1283P-201ENST00000365314 105 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 RNY3P14-201ENST00000384309 102 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 Y_RNA.559-201ENST00000384686 107 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 RPS3AP26-201ENST00000398259 784 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 MRPL32P1-201ENST00000406301 247 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 IFNNP1-201ENST00000429219 553 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AL845321.1-201ENST00000444603 348 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AL671855.1-201ENST00000446875 1203 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 EIF3LP2-201ENST00000457262 807 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AL390198.2-201ENST00000510553 222 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC093878.1-201ENST00000515630 432 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC096661.1-201ENST00000515870 822 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 MTND4LP26-201ENST00000518144 282 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AP000426.1-201ENST00000518749 361 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 HMGB1P1-201ENST00000522557 636 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 MTCO1P49-201ENST00000523429 802 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC023050.2-201ENST00000544968 387 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 SERPINE4P-201ENST00000554978 281 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 MTND4P33-201ENST00000556706 766 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 VN1R88P-201ENST00000596787 292 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AL049840.5-201ENST00000602827 552 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC007038.2-201ENST00000608095 740 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AP005229.2-201ENST00000609980 697 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC073968.1-201ENST00000618594 637 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC104454.1-201ENST00000421341 1401 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 AC092451.3-201ENST00000625067 1343 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 MSL3P1-202ENST00000440028 1468 ntBASIC7.49□□□□□ -1.21
CCDC39Q9UFE4 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 NADK2-201ENST00000282512 2507 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 MTND4P23-201ENST00000447723 1363 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 CASC19-228ENST00000641414 1684 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms