RNA–Protein interactions for RNA: ENST00000522557.1

HMGB1P1-201, Transcript of high mobility group box 1 pseudogene 1, humanhuman

BASIC

Gene HMGB1P1, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P1-201ENST00000522557 AEBP2Q6ZN18 517 aaPredicted RBP25.77■■□□□ 1.72
HMGB1P1-201ENST00000522557 CHIC1Q5VXU3 224 aa24.91■■□□□ 1.58
HMGB1P1-201ENST00000522557 PHF23Q9BUL5 403 aaPredicted RBP21.95■■□□□ 1.1
HMGB1P1-201ENST00000522557 SENP3Q9H4L4 574 aaPredicted RBP21.81■■□□□ 1.08
HMGB1P1-201ENST00000522557 FOXD1Q16676 465 aa20.33■□□□□ 0.85
HMGB1P1-201ENST00000522557 PLPPR3Q6T4P5 718 aa20.11■□□□□ 0.81
HMGB1P1-201ENST00000522557 PPP6R1Q9UPN7 881 aa19.45■□□□□ 0.7
HMGB1P1-201ENST00000522557 ADRA2BP18089 450 aa19.41■□□□□ 0.7
HMGB1P1-201ENST00000522557 PIAS4Q8N2W9 510 aaPredicted RBP19.09■□□□□ 0.65
HMGB1P1-201ENST00000522557 MSH5O43196 834 aa18.74■□□□□ 0.59
HMGB1P1-201ENST00000522557 PPP4R3CPQ6ZMV5 832 aa17.74■□□□□ 0.43
HMGB1P1-201ENST00000522557 MAPK8IP2Q13387 824 aaPredicted RBP17.7■□□□□ 0.42
HMGB1P1-201ENST00000522557 SCAF1Q9H7N4 1312 aaKnown RBP17.66■□□□□ 0.42
HMGB1P1-201ENST00000522557 POTEDQ86YR6 584 aa17.49■□□□□ 0.39
HMGB1P1-201ENST00000522557 DMRT2Q9Y5R5 561 aa17.39■□□□□ 0.37
HMGB1P1-201ENST00000522557 CNKSR2Q8WXI2 1034 aa17.25■□□□□ 0.35
HMGB1P1-201ENST00000522557 NCBP3Q53F19 620 aaKnown RBP17.16■□□□□ 0.34
HMGB1P1-201ENST00000522557 KCNA4P22459 653 aa17.12■□□□□ 0.33
HMGB1P1-201ENST00000522557 NPM3O75607 178 aaKnown RBP16.96■□□□□ 0.31
HMGB1P1-201ENST00000522557 HOXD11P31277 338 aaPredicted RBP16.96■□□□□ 0.31
HMGB1P1-201ENST00000522557 RNF216Q9NWF9 866 aaPredicted RBP16.96■□□□□ 0.31
HMGB1P1-201ENST00000522557 DCAF8L1A6NGE4 600 aa16.69■□□□□ 0.26
HMGB1P1-201ENST00000522557 DNAJC5BQ9UF47 199 aa16.42■□□□□ 0.22
HMGB1P1-201ENST00000522557 SLC4A1APQ9BWU0 796 aaKnown RBP16.24■□□□□ 0.19
HMGB1P1-201ENST00000522557 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.17■□□□□ 0.18
HMGB1P1-201ENST00000522557 SLC4A2P04920 1241 aa16.09■□□□□ 0.17
HMGB1P1-201ENST00000522557 RNF39Q9H2S5 420 aa16.08■□□□□ 0.16
HMGB1P1-201ENST00000522557 U3KPZ7 1027 aaPredicted RBP15.9■□□□□ 0.14
HMGB1P1-201ENST00000522557 C1QBPQ07021 282 aaKnown RBP15.85■□□□□ 0.13
HMGB1P1-201ENST00000522557 CACNB1Q02641 598 aaPredicted RBP15.83■□□□□ 0.12
HMGB1P1-201ENST00000522557 ZBTB22O15209 634 aa15.77■□□□□ 0.12
HMGB1P1-201ENST00000522557 FOXD4L1Q9NU39 408 aa15.76■□□□□ 0.11
HMGB1P1-201ENST00000522557 MYCNP04198 464 aaPredicted RBP15.63■□□□□ 0.09
HMGB1P1-201ENST00000522557 EHMT2Q96KQ7 1210 aa15.58■□□□□ 0.08
HMGB1P1-201ENST00000522557 SPINK5Q9NQ38 1064 aaPredicted RBP15.55■□□□□ 0.08
HMGB1P1-201ENST00000522557 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.54■□□□□ 0.08
HMGB1P1-201ENST00000522557 HNRNPUL2Q1KMD3 747 aaKnown RBP15.54■□□□□ 0.08
HMGB1P1-201ENST00000522557 SAMD1Q6SPF0 538 aaPredicted RBP15.5■□□□□ 0.07
HMGB1P1-201ENST00000522557 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
HMGB1P1-201ENST00000522557 CAPN15O75808 1086 aa15.46■□□□□ 0.07
HMGB1P1-201ENST00000522557 APLP2Q06481 763 aa15.41■□□□□ 0.06
HMGB1P1-201ENST00000522557 TRHP20396 242 aaPredicted RBP15.36■□□□□ 0.05
HMGB1P1-201ENST00000522557 ATF5Q9Y2D1 282 aaPredicted RBP15.32■□□□□ 0.04
HMGB1P1-201ENST00000522557 ZNF219Q9P2Y4 722 aaPredicted RBP15.27■□□□□ 0.04
HMGB1P1-201ENST00000522557 DSG3P32926 999 aa15.26■□□□□ 0.03
HMGB1P1-201ENST00000522557 ATXN8OSP0DMR3 200 aa15.2■□□□□ 0.02
HMGB1P1-201ENST00000522557 ABCB7O75027 752 aa15.18■□□□□ 0.02
HMGB1P1-201ENST00000522557 POLA2Q14181 598 aa15.06■□□□□ 0
HMGB1P1-201ENST00000522557 ZBTB12Q9Y330 459 aaPredicted RBP14.69□□□□□ -0.06
HMGB1P1-201ENST00000522557 MKRN4PQ13434 485 aaPredicted RBP14.62□□□□□ -0.07
HMGB1P1-201ENST00000522557 FBLN2P98095 1184 aa14.6□□□□□ -0.07
HMGB1P1-201ENST00000522557 OSCARQ8IYS5 282 aa14.54□□□□□ -0.08
HMGB1P1-201ENST00000522557 RBM42Q9BTD8 480 aaKnown RBP14.47□□□□□ -0.09
HMGB1P1-201ENST00000522557 SPDYE2BA6NHP3 402 aa14.33□□□□□ -0.12
HMGB1P1-201ENST00000522557 SPDYE6P0CI01 402 aa14.33□□□□□ -0.12
HMGB1P1-201ENST00000522557 SPDYE2Q495Y8 402 aa14.33□□□□□ -0.12
HMGB1P1-201ENST00000522557 AKT1S1Q96B36 256 aa14.28□□□□□ -0.12
HMGB1P1-201ENST00000522557 ZNF692Q9BU19 519 aaPredicted RBP14.28□□□□□ -0.12
HMGB1P1-201ENST00000522557 SSUH2Q9Y2M2 353 aa14.2□□□□□ -0.14
HMGB1P1-201ENST00000522557 REM2Q8IYK8 340 aaPredicted RBP14.18□□□□□ -0.14
HMGB1P1-201ENST00000522557 SPDYE4A6NLX3 237 aa14.16□□□□□ -0.14
HMGB1P1-201ENST00000522557 PABPN1Q86U42 306 aaKnown RBP eCLIP14.09□□□□□ -0.15
HMGB1P1-201ENST00000522557 PITPNM1O00562 1244 aa14.02□□□□□ -0.17
HMGB1P1-201ENST00000522557 FKBP8Q14318 412 aa14.01□□□□□ -0.17
HMGB1P1-201ENST00000522557 CHRDL2Q6WN34 429 aa14□□□□□ -0.17
HMGB1P1-201ENST00000522557 CLEC11AQ9Y240 323 aa13.96□□□□□ -0.17
HMGB1P1-201ENST00000522557 SPDYE1Q8NFV5 336 aaPredicted RBP13.95□□□□□ -0.18
HMGB1P1-201ENST00000522557 PROM2Q8N271 834 aa13.88□□□□□ -0.19
HMGB1P1-201ENST00000522557 PIP4P2Q8N4L2 257 aa13.8□□□□□ -0.2
HMGB1P1-201ENST00000522557 FXR2P51116 673 aaKnown RBP eCLIP13.79□□□□□ -0.2
HMGB1P1-201ENST00000522557 POTEHQ6S545 545 aa13.79□□□□□ -0.2
HMGB1P1-201ENST00000522557 PRR29P0C7W0 189 aa13.78□□□□□ -0.2
HMGB1P1-201ENST00000522557 STAG3Q9UJ98 1225 aa13.76□□□□□ -0.21
HMGB1P1-201ENST00000522557 PRKAR2AP13861 404 aaKnown RBP13.67□□□□□ -0.22
HMGB1P1-201ENST00000522557 CHADLQ6NUI6 762 aa13.66□□□□□ -0.22
HMGB1P1-201ENST00000522557 CREBZFQ9NS37 354 aa13.58□□□□□ -0.24
HMGB1P1-201ENST00000522557 FBXO3Q9UK99 471 aa13.49□□□□□ -0.25
HMGB1P1-201ENST00000522557 FARP1Q9Y4F1 1045 aaPredicted RBP13.48□□□□□ -0.25
HMGB1P1-201ENST00000522557 MIER1Q8N108 512 aa13.47□□□□□ -0.25
HMGB1P1-201ENST00000522557 HAX1O00165 279 aa13.41□□□□□ -0.26
HMGB1P1-201ENST00000522557 MNX1P50219 401 aaPredicted RBP13.41□□□□□ -0.26
HMGB1P1-201ENST00000522557 PLCD3Q8N3E9 789 aa13.41□□□□□ -0.26
HMGB1P1-201ENST00000522557 VASPP50552 380 aaPredicted RBP13.36□□□□□ -0.27
HMGB1P1-201ENST00000522557 EVX2Q03828 476 aa13.35□□□□□ -0.27
HMGB1P1-201ENST00000522557 PLEKHG5O94827 1062 aa13.34□□□□□ -0.27
HMGB1P1-201ENST00000522557 C19orf67A6NJJ6 358 aa13.33□□□□□ -0.28
HMGB1P1-201ENST00000522557 NPM1P06748 294 aaKnown RBP eCLIP13.29□□□□□ -0.28
HMGB1P1-201ENST00000522557 CD44P16070 742 aaKnown RBP13.25□□□□□ -0.29
HMGB1P1-201ENST00000522557 IFNLR1Q8IU57 520 aaPredicted RBP13.2□□□□□ -0.3
HMGB1P1-201ENST00000522557 ZBTB47Q9UFB7 747 aaPredicted RBP13.2□□□□□ -0.3
HMGB1P1-201ENST00000522557 KLHL34Q8N239 644 aa13.19□□□□□ -0.3
HMGB1P1-201ENST00000522557 SP7Q8TDD2 431 aaPredicted RBP13.16□□□□□ -0.3
HMGB1P1-201ENST00000522557 ZRANB1Q9UGI0 708 aa13.16□□□□□ -0.3
HMGB1P1-201ENST00000522557 NUBP1P53384 320 aa13.15□□□□□ -0.3
HMGB1P1-201ENST00000522557 RASEFQ8IZ41 740 aa13.15□□□□□ -0.3
HMGB1P1-201ENST00000522557 TSPYL2Q9H2G4 693 aaPredicted RBP13.14□□□□□ -0.31
HMGB1P1-201ENST00000522557 PAK3O75914 559 aaPredicted RBP13.1□□□□□ -0.31
HMGB1P1-201ENST00000522557 ZNF579Q8NAF0 562 aaKnown RBP13.05□□□□□ -0.32
HMGB1P1-201ENST00000522557 PHF12Q96QT6 1004 aa13.04□□□□□ -0.32
HMGB1P1-201ENST00000522557 SPOCK2Q92563 424 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms