Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.79□□□□□ -1.8
PRKDCP78527 MRPL35P2-201ENST00000448009 511 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 OR52J1P-201ENST00000450596 932 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC3.79□□□□□ -1.8
PRKDCP78527 AL356390.1-201ENST00000455684 397 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 RN7SL352P-201ENST00000466002 277 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 OR8A2P-201ENST00000528631 952 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 AC106785.1-201ENST00000565935 262 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 AP003789.1-201ENST00000617737 605 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 PTPRB-204ENST00000538708 5839 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 C18orf32-203ENST00000613385 5395 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
PRKDCP78527 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 AC006600.2-201ENST00000624834 2506 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 RPL36AP36-201ENST00000418616 301 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 SLC25A14P1-201ENST00000502867 901 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC3.79□□□□□ -1.8
PRKDCP78527 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC3.79□□□□□ -1.8
PRKDCP78527 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC3.79□□□□□ -1.8
PRKDCP78527 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC3.79□□□□□ -1.8
PRKDCP78527 AC004890.3-201ENST00000605566 1095 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 AC034229.5-201ENST00000624258 185 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 PRRC2C-204ENST00000426496 10175 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 KIAA0319-206ENST00000616673 5315 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC3.79□□□□□ -1.8
PRKDCP78527 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
PRKDCP78527 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 RCC2P2-201ENST00000422174 918 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 AL731534.1-201ENST00000434711 269 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC3.79□□□□□ -1.8
PRKDCP78527 RN7SL542P-201ENST00000467147 294 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 RGS5-219ENST00000528019 512 ntTSL 4 BASIC3.79□□□□□ -1.8
PRKDCP78527 OR5AM1P-201ENST00000532136 1032 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC3.79□□□□□ -1.8
PRKDCP78527 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC3.79□□□□□ -1.8
PRKDCP78527 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 MTCO1P15-201ENST00000529569 1526 ntBASIC3.79□□□□□ -1.8
PRKDCP78527 PRDM10-207ENST00000528746 6182 ntTSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC3.79□□□□□ -1.8
PRKDCP78527 USP3-201ENST00000268049 5311 ntTSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC3.78□□□□□ -1.8
PRKDCP78527 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC3.78□□□□□ -1.8
PRKDCP78527 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC3.78□□□□□ -1.8
PRKDCP78527 RBM27-201ENST00000265271 6451 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
PRKDCP78527 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC3.78□□□□□ -1.8
PRKDCP78527 CYCSP10-201ENST00000417973 294 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 AC010733.1-201ENST00000451515 401 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC3.78□□□□□ -1.8
PRKDCP78527 CDC42EP3P1-201ENST00000601004 764 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 AL591034.3-201ENST00000605511 685 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 AL445647.2-201ENST00000615170 130 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 TMCC1-202ENST00000426664 5484 ntTSL 5 BASIC3.78□□□□□ -1.8
PRKDCP78527 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC3.78□□□□□ -1.8
PRKDCP78527 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 AC007998.4-201ENST00000612496 2533 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
PRKDCP78527 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC3.78□□□□□ -1.8
PRKDCP78527 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC3.78□□□□□ -1.8
PRKDCP78527 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 RPS27AP12-201ENST00000429552 465 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC3.78□□□□□ -1.8
PRKDCP78527 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC3.78□□□□□ -1.8
PRKDCP78527 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC3.78□□□□□ -1.8
PRKDCP78527 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.78□□□□□ -1.8
PRKDCP78527 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC3.78□□□□□ -1.8
PRKDCP78527 THAP12P9-201ENST00000503971 2360 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 RAD18-201ENST00000264926 5886 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC3.78□□□□□ -1.8
PRKDCP78527 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 FAT1-201ENST00000441802 14786 ntAPPRIS P2 TSL 5 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms