Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 BTG3P1-201ENST00000435859 716 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 CYP4F27P-201ENST00000514557 494 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 IGLV3-30-201ENST00000524362 298 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AC130364.2-201ENST00000528639 604 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 OR10G5P-201ENST00000532733 358 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 IGBP1P1-201ENST00000554337 1009 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 MIR1269B-201ENST00000580405 75 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AC016769.4-201ENST00000616893 535 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 CASC19-222ENST00000641321 1173 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 OR11H2-202ENST00000641517 1085 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AL138820.1-201ENST00000617901 5305 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 RNA5SP394-201ENST00000364216 119 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 RNA5SP211-201ENST00000365516 117 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 RNA5SP251-201ENST00000410614 137 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 RPL23AP18-201ENST00000416139 468 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 VN1R31P-201ENST00000417498 730 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 DPPA2P2-201ENST00000418220 897 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 RPL12P43-201ENST00000420608 499 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 DEFA9P-201ENST00000433042 285 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AL663074.2-201ENST00000440621 479 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AC023141.8-201ENST00000442554 208 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AL606490.1-201ENST00000452266 765 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 SNORA26.10-201ENST00000516427 141 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 RN7SL544P-201ENST00000617232 284 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AC118658.2-201ENST00000618697 459 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 RN7SL763P-201ENST00000620922 284 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 AC087565.3-203ENST00000641018 837 ntBASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
HDDC3Q8N4P3 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.9□□□□□ -1.47
HDDC3Q8N4P3 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.9□□□□□ -1.47
HDDC3Q8N4P3 SAMMSON-210ENST00000641260 1308 ntBASIC5.9□□□□□ -1.47
HDDC3Q8N4P3 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HDDC3Q8N4P3 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HDDC3Q8N4P3 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.9□□□□□ -1.47
HDDC3Q8N4P3 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.9□□□□□ -1.47
HDDC3Q8N4P3 C4BPAP1-201ENST00000415474 1893 ntBASIC5.9□□□□□ -1.47
HDDC3Q8N4P3 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 MTND5P23-201ENST00000430812 1655 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 RN7SKP59-201ENST00000410520 314 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 TMA16P2-201ENST00000413187 601 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 HMGA1P8-201ENST00000414130 321 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 HMGB3P24-201ENST00000433260 622 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 H3F3BP1-201ENST00000440551 403 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 SNRPFP2-201ENST00000440710 251 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AC239798.3-201ENST00000454459 408 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms