RNA–Protein interactions for RNA: ENST00000639953.1

ATM-229, Transcript of ATM serine/threonine kinase, humanhuman

TSL 5 BASIC

Gene ATM, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATM-229ENST00000639953 AEBP2Q6ZN18 517 aaPredicted RBP28.58■■■□□ 2.17
ATM-229ENST00000639953 CHIC1Q5VXU3 224 aa27.25■■□□□ 1.95
ATM-229ENST00000639953 SENP3Q9H4L4 574 aaPredicted RBP24.22■■□□□ 1.47
ATM-229ENST00000639953 PHF23Q9BUL5 403 aaPredicted RBP24.03■■□□□ 1.44
ATM-229ENST00000639953 FOXD1Q16676 465 aa22.65■■□□□ 1.22
ATM-229ENST00000639953 PLPPR3Q6T4P5 718 aa21.83■■□□□ 1.09
ATM-229ENST00000639953 PPP6R1Q9UPN7 881 aa21.4■■□□□ 1.02
ATM-229ENST00000639953 ADRA2BP18089 450 aa21.33■■□□□ 1.01
ATM-229ENST00000639953 PIAS4Q8N2W9 510 aaPredicted RBP21.17■□□□□ 0.98
ATM-229ENST00000639953 MSH5O43196 834 aa21■□□□□ 0.95
ATM-229ENST00000639953 POTEDQ86YR6 584 aa20.27■□□□□ 0.84
ATM-229ENST00000639953 MAPK8IP2Q13387 824 aaPredicted RBP19.57■□□□□ 0.72
ATM-229ENST00000639953 SCAF1Q9H7N4 1312 aaKnown RBP19.37■□□□□ 0.69
ATM-229ENST00000639953 DMRT2Q9Y5R5 561 aa19.26■□□□□ 0.67
ATM-229ENST00000639953 PPP4R3CPQ6ZMV5 832 aa19.23■□□□□ 0.67
ATM-229ENST00000639953 CNKSR2Q8WXI2 1034 aa18.77■□□□□ 0.6
ATM-229ENST00000639953 HOXD11P31277 338 aaPredicted RBP18.63■□□□□ 0.57
ATM-229ENST00000639953 DCAF8L1A6NGE4 600 aa18.53■□□□□ 0.56
ATM-229ENST00000639953 RNF216Q9NWF9 866 aaPredicted RBP18.53■□□□□ 0.56
ATM-229ENST00000639953 NCBP3Q53F19 620 aaKnown RBP18.46■□□□□ 0.55
ATM-229ENST00000639953 NPM3O75607 178 aaKnown RBP18.28■□□□□ 0.52
ATM-229ENST00000639953 KCNA4P22459 653 aa18.14■□□□□ 0.49
ATM-229ENST00000639953 RNF39Q9H2S5 420 aa17.99■□□□□ 0.47
ATM-229ENST00000639953 CACNB1Q02641 598 aaPredicted RBP17.97■□□□□ 0.47
ATM-229ENST00000639953 DNAJC5BQ9UF47 199 aa17.86■□□□□ 0.45
ATM-229ENST00000639953 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.78■□□□□ 0.449e-10■■□□□ 12.4
ATM-229ENST00000639953 C1QBPQ07021 282 aaKnown RBP17.71■□□□□ 0.43
ATM-229ENST00000639953 SLC4A2P04920 1241 aa17.44■□□□□ 0.38
ATM-229ENST00000639953 U3KPZ7 1027 aaPredicted RBP17.44■□□□□ 0.38
ATM-229ENST00000639953 SPINK5Q9NQ38 1064 aaPredicted RBP17.18■□□□□ 0.34
ATM-229ENST00000639953 SLC4A1APQ9BWU0 796 aaKnown RBP17.12■□□□□ 0.33
ATM-229ENST00000639953 CAPN15O75808 1086 aa17.09■□□□□ 0.33
ATM-229ENST00000639953 DSG3P32926 999 aa16.95■□□□□ 0.3
ATM-229ENST00000639953 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.89■□□□□ 0.29
ATM-229ENST00000639953 TRHP20396 242 aaPredicted RBP16.89■□□□□ 0.29
ATM-229ENST00000639953 HNRNPUL2Q1KMD3 747 aaKnown RBP16.89■□□□□ 0.29
ATM-229ENST00000639953 MYCNP04198 464 aaPredicted RBP16.83■□□□□ 0.28
ATM-229ENST00000639953 APLP2Q06481 763 aa16.83■□□□□ 0.28
ATM-229ENST00000639953 SAMD1Q6SPF0 538 aaPredicted RBP16.83■□□□□ 0.28
ATM-229ENST00000639953 FOXD4L1Q9NU39 408 aa16.79■□□□□ 0.28
ATM-229ENST00000639953 ABCB7O75027 752 aa16.76■□□□□ 0.27
ATM-229ENST00000639953 ZNF219Q9P2Y4 722 aaPredicted RBP16.74■□□□□ 0.27
ATM-229ENST00000639953 ZBTB22O15209 634 aa16.7■□□□□ 0.26
ATM-229ENST00000639953 ATF5Q9Y2D1 282 aaPredicted RBP16.57■□□□□ 0.24
ATM-229ENST00000639953 POLA2Q14181 598 aa16.49■□□□□ 0.23
ATM-229ENST00000639953 ATXN8OSP0DMR3 200 aa16.2■□□□□ 0.18
ATM-229ENST00000639953 CSRNP3Q8WYN3 585 aa16.11■□□□□ 0.17
ATM-229ENST00000639953 RBM42Q9BTD8 480 aaKnown RBP16.05■□□□□ 0.16
ATM-229ENST00000639953 EHMT2Q96KQ7 1210 aa16.01■□□□□ 0.15
ATM-229ENST00000639953 ZBTB12Q9Y330 459 aaPredicted RBP16■□□□□ 0.15
ATM-229ENST00000639953 OSCARQ8IYS5 282 aa15.92■□□□□ 0.14
ATM-229ENST00000639953 POTEHQ6S545 545 aa15.89■□□□□ 0.13
ATM-229ENST00000639953 MKRN4PQ13434 485 aaPredicted RBP15.78■□□□□ 0.12
ATM-229ENST00000639953 AKT1S1Q96B36 256 aa15.78■□□□□ 0.12
ATM-229ENST00000639953 FBLN2P98095 1184 aa15.77■□□□□ 0.12
ATM-229ENST00000639953 CHRDL2Q6WN34 429 aa15.7■□□□□ 0.1
ATM-229ENST00000639953 REM2Q8IYK8 340 aaPredicted RBP15.68■□□□□ 0.1
ATM-229ENST00000639953 SPDYE2BA6NHP3 402 aa15.59■□□□□ 0.09
ATM-229ENST00000639953 SPDYE6P0CI01 402 aa15.59■□□□□ 0.09
ATM-229ENST00000639953 SPDYE2Q495Y8 402 aa15.59■□□□□ 0.09
ATM-229ENST00000639953 PITPNM1O00562 1244 aa15.51■□□□□ 0.07
ATM-229ENST00000639953 ZNF692Q9BU19 519 aaPredicted RBP15.51■□□□□ 0.07
ATM-229ENST00000639953 SSUH2Q9Y2M2 353 aa15.42■□□□□ 0.06
ATM-229ENST00000639953 PIP4P2Q8N4L2 257 aa15.4■□□□□ 0.06
ATM-229ENST00000639953 FXR2P51116 673 aaKnown RBP eCLIP15.33■□□□□ 0.04
ATM-229ENST00000639953 CLEC11AQ9Y240 323 aa15.33■□□□□ 0.04
ATM-229ENST00000639953 PABPN1Q86U42 306 aaKnown RBP eCLIP15.29■□□□□ 0.04
ATM-229ENST00000639953 SPDYE1Q8NFV5 336 aaPredicted RBP15.28■□□□□ 0.04
ATM-229ENST00000639953 PRKAR2AP13861 404 aaKnown RBP15.12■□□□□ 0.01
ATM-229ENST00000639953 SPDYE4A6NLX3 237 aa15.09■□□□□ 0.01
ATM-229ENST00000639953 HAX1O00165 279 aa15.08■□□□□ 0
ATM-229ENST00000639953 PRR29P0C7W0 189 aa15.07■□□□□ 0
ATM-229ENST00000639953 CHADLQ6NUI6 762 aa15.05■□□□□ -0
ATM-229ENST00000639953 EVX2Q03828 476 aa15□□□□□ -0.01
ATM-229ENST00000639953 SP7Q8TDD2 431 aaPredicted RBP14.98□□□□□ -0.01
ATM-229ENST00000639953 C19orf67A6NJJ6 358 aa14.83□□□□□ -0.04
ATM-229ENST00000639953 STAG3Q9UJ98 1225 aa14.83□□□□□ -0.04
ATM-229ENST00000639953 FARP1Q9Y4F1 1045 aaPredicted RBP14.78□□□□□ -0.04
ATM-229ENST00000639953 CREBZFQ9NS37 354 aa14.77□□□□□ -0.05
ATM-229ENST00000639953 PROM2Q8N271 834 aa14.72□□□□□ -0.05
ATM-229ENST00000639953 CD44P16070 742 aaKnown RBP14.63□□□□□ -0.07
ATM-229ENST00000639953 GABBR2O75899 941 aa14.6□□□□□ -0.07
ATM-229ENST00000639953 FKBP8Q14318 412 aa14.57□□□□□ -0.08
ATM-229ENST00000639953 MNX1P50219 401 aaPredicted RBP14.53□□□□□ -0.08
ATM-229ENST00000639953 ZRANB1Q9UGI0 708 aa14.48□□□□□ -0.09
ATM-229ENST00000639953 NPM1P06748 294 aaKnown RBP eCLIP14.43□□□□□ -0.1
ATM-229ENST00000639953 MIER1Q8N108 512 aa14.41□□□□□ -0.1
ATM-229ENST00000639953 ZNF579Q8NAF0 562 aaKnown RBP14.38□□□□□ -0.11
ATM-229ENST00000639953 POTEIP0CG38 1075 aa14.32□□□□□ -0.12
ATM-229ENST00000639953 PHF12Q96QT6 1004 aa14.32□□□□□ -0.12
ATM-229ENST00000639953 PAK3O75914 559 aaPredicted RBP14.31□□□□□ -0.12
ATM-229ENST00000639953 CLCN6P51797 869 aa14.28□□□□□ -0.12
ATM-229ENST00000639953 PLCD3Q8N3E9 789 aa14.28□□□□□ -0.12
ATM-229ENST00000639953 GALR2O43603 387 aaPredicted RBP14.27□□□□□ -0.13
ATM-229ENST00000639953 TSPYL2Q9H2G4 693 aaPredicted RBP14.27□□□□□ -0.13
ATM-229ENST00000639953 PLEKHG5O94827 1062 aa14.26□□□□□ -0.13
ATM-229ENST00000639953 DCBLD2Q96PD2 775 aa14.21□□□□□ -0.13
ATM-229ENST00000639953 RASEFQ8IZ41 740 aa14.18□□□□□ -0.14
ATM-229ENST00000639953 CCDC61Q9Y6R9 512 aa14.15□□□□□ -0.14
ATM-229ENST00000639953 FBXO3Q9UK99 471 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms