Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC4.99□□□□□ -1.61
CDX1P47902 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC4.99□□□□□ -1.61
CDX1P47902 KHDC1P1-201ENST00000511053 508 ntBASIC4.99□□□□□ -1.61
CDX1P47902 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.99□□□□□ -1.61
CDX1P47902 AC034244.2-201ENST00000514668 858 ntBASIC4.99□□□□□ -1.61
CDX1P47902 OR4A43P-201ENST00000532938 908 ntBASIC4.99□□□□□ -1.61
CDX1P47902 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC4.99□□□□□ -1.61
CDX1P47902 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.99□□□□□ -1.61
CDX1P47902 MYL2-203ENST00000548438 664 ntTSL 3 BASIC4.99□□□□□ -1.61
CDX1P47902 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.99□□□□□ -1.61
CDX1P47902 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CDX1P47902 AL359219.2-201ENST00000555184 348 ntBASIC4.99□□□□□ -1.61
CDX1P47902 TPRX1P1-201ENST00000557620 319 ntBASIC4.99□□□□□ -1.61
CDX1P47902 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC4.99□□□□□ -1.61
CDX1P47902 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.99□□□□□ -1.61
CDX1P47902 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC4.99□□□□□ -1.61
CDX1P47902 Z95327.3-201ENST00000610385 572 ntBASIC4.99□□□□□ -1.61
CDX1P47902 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CDX1P47902 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.99□□□□□ -1.61
CDX1P47902 AL132640.3-201ENST00000630473 177 ntBASIC4.99□□□□□ -1.61
CDX1P47902 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CDX1P47902 AC004076.2-201ENST00000620532 3323 ntBASIC4.99□□□□□ -1.61
CDX1P47902 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.99□□□□□ -1.61
CDX1P47902 AC009501.3-201ENST00000605001 1352 ntBASIC4.99□□□□□ -1.61
CDX1P47902 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CDX1P47902 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CDX1P47902 AL353743.3-201ENST00000442109 1468 ntBASIC4.99□□□□□ -1.61
CDX1P47902 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CDX1P47902 USP46-202ENST00000451218 4622 ntTSL 5 BASIC4.99□□□□□ -1.61
CDX1P47902 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CDX1P47902 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
CDX1P47902 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 AC017002.4-201ENST00000604721 1525 ntBASIC4.98□□□□□ -1.61
CDX1P47902 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
CDX1P47902 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 CASC19-246ENST00000641625 1606 ntBASIC4.98□□□□□ -1.61
CDX1P47902 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC4.98□□□□□ -1.61
CDX1P47902 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.98□□□□□ -1.61
CDX1P47902 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC4.98□□□□□ -1.61
CDX1P47902 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
CDX1P47902 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 SNORD35A-201ENST00000363389 86 ntBASIC4.98□□□□□ -1.61
CDX1P47902 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 RBBP4P5-201ENST00000398583 1266 ntBASIC4.98□□□□□ -1.61
CDX1P47902 VN1R12P-201ENST00000403778 876 ntBASIC4.98□□□□□ -1.61
CDX1P47902 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC4.98□□□□□ -1.61
CDX1P47902 RN7SKP281-201ENST00000410472 352 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AL157884.1-201ENST00000424561 454 ntBASIC4.98□□□□□ -1.61
CDX1P47902 RPSAP65-201ENST00000429660 595 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 OR13K1P-201ENST00000444577 975 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AL022237.1-201ENST00000446663 358 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AL022319.1-201ENST00000458183 1167 ntBASIC4.98□□□□□ -1.61
CDX1P47902 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC4.98□□□□□ -1.61
CDX1P47902 RPSAP37-201ENST00000470913 821 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AC079080.1-201ENST00000479841 822 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AC106822.1-201ENST00000502647 526 ntBASIC4.98□□□□□ -1.61
CDX1P47902 HMGB1P3-201ENST00000502802 616 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC4.98□□□□□ -1.61
CDX1P47902 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC4.98□□□□□ -1.61
CDX1P47902 BTG4P1-201ENST00000510421 183 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AC108103.1-201ENST00000511286 446 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AC106800.3-201ENST00000511389 308 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AC093770.1-201ENST00000511559 571 ntBASIC4.98□□□□□ -1.61
CDX1P47902 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC4.98□□□□□ -1.61
CDX1P47902 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC4.98□□□□□ -1.61
CDX1P47902 ODF1-202ENST00000518835 368 ntTSL 3 BASIC4.98□□□□□ -1.61
CDX1P47902 HMGB1P46-201ENST00000520062 610 ntBASIC4.98□□□□□ -1.61
CDX1P47902 IGHV4-55-201ENST00000520889 368 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC4.98□□□□□ -1.61
CDX1P47902 AP004609.2-201ENST00000532177 190 ntBASIC4.98□□□□□ -1.61
CDX1P47902 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.98□□□□□ -1.61
CDX1P47902 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC4.98□□□□□ -1.61
CDX1P47902 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC4.98□□□□□ -1.61
CDX1P47902 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC4.98□□□□□ -1.61
CDX1P47902 AC005632.2-201ENST00000564271 828 ntBASIC4.98□□□□□ -1.61
CDX1P47902 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC4.98□□□□□ -1.61
CDX1P47902 AC090616.1-201ENST00000583895 447 ntBASIC4.98□□□□□ -1.61
CDX1P47902 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC4.98□□□□□ -1.61
CDX1P47902 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC4.98□□□□□ -1.61
CDX1P47902 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC4.98□□□□□ -1.61
CDX1P47902 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC4.98□□□□□ -1.61
CDX1P47902 AC040174.2-201ENST00000602701 465 ntBASIC4.98□□□□□ -1.61
CDX1P47902 SMIM12P1-201ENST00000603004 274 ntBASIC4.98□□□□□ -1.61
CDX1P47902 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC4.98□□□□□ -1.61
CDX1P47902 DRG1-207ENST00000629688 309 ntTSL 5 BASIC4.98□□□□□ -1.61
CDX1P47902 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CDX1P47902 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC4.98□□□□□ -1.61
CDX1P47902 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
CDX1P47902 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC4.98□□□□□ -1.61
CDX1P47902 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms