Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 RPL17P50-201ENST00000396131 546 ntBASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 HCG14-201ENST00000444986 413 ntTSL 2 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 OSTCP1-201ENST00000455507 450 ntBASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 RNA5SP373-201ENST00000517271 95 ntBASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 MITF-203ENST00000328528 4680 ntTSL 5 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AC103987.1-201ENST00000473394 348 ntBASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AC021106.1-201ENST00000509020 1058 ntBASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AC007346.2-201ENST00000564816 892 ntBASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 UBA3-213ENST00000631029 123 ntTSL 5 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC7.13□□□□□ -1.27
SHANK3Q9BYB0 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 AP004607.3-201ENST00000530354 3915 ntBASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 HSPD1P7-201ENST00000447985 1686 ntBASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 MT-RNR2-201ENST00000387347 1559 ntBASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 RPL17P36-201ENST00000420302 549 ntBASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 AL627230.1-201ENST00000613077 211 ntBASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 AL591926.8-201ENST00000616876 211 ntBASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 AC140479.2-201ENST00000421567 3130 ntBASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SHANK3Q9BYB0 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 AL589993.1-201ENST00000407450 2524 ntBASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 AC002090.1-201ENST00000625000 2138 ntBASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 AL449283.1-201ENST00000602631 3403 ntBASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 TMEM183AP1-205ENST00000432739 290 ntBASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 AC137627.1-201ENST00000545761 289 ntBASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 PCNPP1-201ENST00000552501 511 ntBASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 OR11H3P-201ENST00000554547 982 ntBASIC7.11□□□□□ -1.27
SHANK3Q9BYB0 AC006115.2-201ENST00000596823 202 ntBASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms