Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 UBE2V1-202ENST00000371657 1973 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 ST7-213ENST00000432298 1956 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 PEX19-201ENST00000368072 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 DCP1A-201ENST00000294241 1853 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 LST1-211ENST00000376110 433 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 GPX2-201ENST00000389614 990 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 HNRNPCP2-201ENST00000399515 881 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 PPP1R17-202ENST00000409146 569 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 OR8G2P-201ENST00000412796 908 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 RPL30P16-201ENST00000419341 429 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 DUTP4-201ENST00000424782 475 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 SNX18P3-201ENST00000424993 835 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 GAPDHP51-201ENST00000426454 1000 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC104843.2-201ENST00000427666 297 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 SNX18P14-201ENST00000429308 574 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 FTH1P20-201ENST00000434913 548 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 ZNF385D-AS2-202ENST00000448980 370 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 RN7SL751P-201ENST00000473281 284 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 RN7SL549P-201ENST00000478997 282 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 RN7SL338P-201ENST00000481467 293 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 PRICKLE2-AS2-201ENST00000484703 496 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC095059.2-201ENST00000510601 933 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AP000880.1-201ENST00000529416 743 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC009869.1-201ENST00000530418 528 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 OR8G3P-201ENST00000533406 921 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 FXYD5-207ENST00000541435 898 ntAPPRIS P2 TSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 NANOGNBP2-201ENST00000544753 553 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 CPM-202ENST00000546373 2116 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 DCN-209ENST00000546745 1026 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AL162171.2-201ENST00000555444 905 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 IGHV1OR15-3-201ENST00000564926 351 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 LINC01989-201ENST00000566930 1081 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 MIR5192-201ENST00000579892 92 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 SYPL1P2-201ENST00000582878 727 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC090616.1-201ENST00000583895 447 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC005771.1-201ENST00000585581 349 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC093503.1-202ENST00000598743 478 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 BNIP3P30-201ENST00000601184 574 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 U47924.1-201ENST00000606539 434 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AL135999.3-201ENST00000610501 812 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 Metazoa_SRP.167-201ENST00000614947 260 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 CCL14-202ENST00000618404 898 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC018816.2-201ENST00000621460 353 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 CDRT1-208ENST00000630868 794 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC073488.2-201ENST00000631903 751 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC244258.1-201ENST00000637553 1071 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AC018793.5-201ENST00000640302 585 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 OR52B5P-202ENST00000641118 1110 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 CLK1-215ENST00000621181 1843 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 COL6A4P1-202ENST00000487147 4317 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 AL355488.2-201ENST00000609909 2850 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 CHIC1-201ENST00000373502 4158 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms