Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC138932.1-201ENST00000534164 6830 ntBASIC15.9■□□□□ 0.14
FOXA2Q9Y261 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 Z82202.1-201ENST00000623446 1880 ntBASIC15.9■□□□□ 0.14
FOXA2Q9Y261 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA2Q9Y261 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 AC098818.2-201ENST00000564925 2320 ntBASIC15.89■□□□□ 0.13
FOXA2Q9Y261 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 DUSP5P2-201ENST00000426873 1033 ntBASIC15.89■□□□□ 0.13
FOXA2Q9Y261 AC073210.2-201ENST00000430369 194 ntBASIC15.89■□□□□ 0.13
FOXA2Q9Y261 AC069152.1-201ENST00000438030 544 ntBASIC15.89■□□□□ 0.13
FOXA2Q9Y261 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 C2orf69P4-201ENST00000565394 541 ntBASIC15.89■□□□□ 0.13
FOXA2Q9Y261 BRWD1-AS2-201ENST00000603064 1028 ntBASIC15.89■□□□□ 0.13
FOXA2Q9Y261 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA2Q9Y261 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 AC097658.1-201ENST00000475555 843 ntBASIC15.88■□□□□ 0.13
FOXA2Q9Y261 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 RGMA-211ENST00000557420 989 ntTSL 3 BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA2Q9Y261 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 OR2A1-AS1-201ENST00000462305 773 ntBASIC15.87■□□□□ 0.13
FOXA2Q9Y261 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 AC091874.3-201ENST00000512672 1195 ntBASIC15.87■□□□□ 0.13
FOXA2Q9Y261 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 AP000974.1-201ENST00000623909 2387 ntBASIC15.87■□□□□ 0.13
FOXA2Q9Y261 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA2Q9Y261 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 PHGDH-210ENST00000641115 1638 ntBASIC15.86■□□□□ 0.13
FOXA2Q9Y261 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms