Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.91■■□□□ 1.42
ZC3H4Q9UPT8 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
ZC3H4Q9UPT8 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
ZC3H4Q9UPT8 KRT8P10-201ENST00000450021 1447 ntBASIC23.91■■□□□ 1.42
ZC3H4Q9UPT8 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZC3H4Q9UPT8 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZC3H4Q9UPT8 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC23.91■■□□□ 1.42
ZC3H4Q9UPT8 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC23.91■■□□□ 1.42
ZC3H4Q9UPT8 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 AP000523.1-201ENST00000398242 1049 ntBASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 LY6E-213ENST00000522528 606 ntTSL 3 BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 NPAP1P7-201ENST00000613027 823 ntBASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZC3H4Q9UPT8 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
ZC3H4Q9UPT8 AP000593.1-201ENST00000393668 712 ntBASIC23.89■■□□□ 1.42
ZC3H4Q9UPT8 FXN-203ENST00000396366 922 ntTSL 2 BASIC23.89■■□□□ 1.42
ZC3H4Q9UPT8 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC23.89■■□□□ 1.42
ZC3H4Q9UPT8 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
ZC3H4Q9UPT8 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC23.89■■□□□ 1.42
ZC3H4Q9UPT8 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC23.89■■□□□ 1.42
ZC3H4Q9UPT8 BCL10-202ENST00000620248 774 ntTSL 5 BASIC23.89■■□□□ 1.42
ZC3H4Q9UPT8 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
ZC3H4Q9UPT8 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
ZC3H4Q9UPT8 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.42
ZC3H4Q9UPT8 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
ZC3H4Q9UPT8 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
ZC3H4Q9UPT8 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
ZC3H4Q9UPT8 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
ZC3H4Q9UPT8 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
ZC3H4Q9UPT8 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
ZC3H4Q9UPT8 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
ZC3H4Q9UPT8 C1orf229-201ENST00000623686 2258 ntBASIC23.89■■□□□ 1.41
ZC3H4Q9UPT8 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 AC007375.3-201ENST00000600936 2314 ntBASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
ZC3H4Q9UPT8 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 CALM1-205ENST00000553542 877 ntTSL 5 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
ZC3H4Q9UPT8 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 AC112907.2-201ENST00000448639 330 ntBASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 PRELID1P1-202ENST00000567272 903 ntBASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 AC116351.2-201ENST00000606540 1585 ntBASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
ZC3H4Q9UPT8 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms