Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VSX1Q9NZR4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 AC006970.2-201ENST00000450065 779 ntBASIC17.54■□□□□ 0.4
VSX1Q9NZR4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 AC083906.2-201ENST00000511578 360 ntBASIC17.54■□□□□ 0.4
VSX1Q9NZR4 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 AC092118.2-201ENST00000613495 667 ntBASIC17.54■□□□□ 0.4
VSX1Q9NZR4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 AC018553.1-201ENST00000616682 1458 ntBASIC17.54■□□□□ 0.4
VSX1Q9NZR4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.54■□□□□ 0.4
VSX1Q9NZR4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 DUSP5P2-201ENST00000426873 1033 ntBASIC17.53■□□□□ 0.4
VSX1Q9NZR4 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.53■□□□□ 0.4
VSX1Q9NZR4 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 AC005829.2-201ENST00000571422 1056 ntBASIC17.53■□□□□ 0.4
VSX1Q9NZR4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VSX1Q9NZR4 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 AL390719.1-204ENST00000412397 1219 ntBASIC17.52■□□□□ 0.4
VSX1Q9NZR4 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VSX1Q9NZR4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VSX1Q9NZR4 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VSX1Q9NZR4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.52■□□□□ 0.39
VSX1Q9NZR4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
VSX1Q9NZR4 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
VSX1Q9NZR4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
VSX1Q9NZR4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VSX1Q9NZR4 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
VSX1Q9NZR4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms