Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 AC012618.2-201ENST00000428058 849 ntBASIC18.66■□□□□ 0.58
SCN3AQ9NY46 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 AC110285.5-201ENST00000611501 352 ntBASIC18.66■□□□□ 0.58
SCN3AQ9NY46 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN3AQ9NY46 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN3AQ9NY46 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SCN3AQ9NY46 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SCN3AQ9NY46 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.64■□□□□ 0.58
SCN3AQ9NY46 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.64■□□□□ 0.58
SCN3AQ9NY46 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.64■□□□□ 0.58
SCN3AQ9NY46 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.64■□□□□ 0.58
SCN3AQ9NY46 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 SLC25A24-204ENST00000569674 2357 ntBASIC18.64■□□□□ 0.57
SCN3AQ9NY46 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN3AQ9NY46 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN3AQ9NY46 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 UBE2SP1-201ENST00000450587 669 ntBASIC18.62■□□□□ 0.57
SCN3AQ9NY46 KRT16P5-201ENST00000455284 522 ntBASIC18.62■□□□□ 0.57
SCN3AQ9NY46 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 PRKY-204ENST00000533551 1019 ntBASIC18.62■□□□□ 0.57
SCN3AQ9NY46 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.62■□□□□ 0.57
SCN3AQ9NY46 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms