Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 AC010980.1-201ENST00000587192 1142 ntBASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 AC021242.3-201ENST00000607598 1377 ntBASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VCX3AQ9NNX9 AC009053.2-201ENST00000563701 2365 ntBASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 AC055733.4-201ENST00000638462 1354 ntBASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 AC011270.2-201ENST00000624293 2550 ntBASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 ABHD17AP3-201ENST00000503096 1137 ntBASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.35■□□□□ 0.53
VCX3AQ9NNX9 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 AL117332.1-201ENST00000622628 974 ntBASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 AC124067.4-201ENST00000519691 2379 ntBASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 AC090164.3-201ENST00000610780 2143 ntBASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCX3AQ9NNX9 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VCX3AQ9NNX9 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VCX3AQ9NNX9 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VCX3AQ9NNX9 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.33■□□□□ 0.53
VCX3AQ9NNX9 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
VCX3AQ9NNX9 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
VCX3AQ9NNX9 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
VCX3AQ9NNX9 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
VCX3AQ9NNX9 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCX3AQ9NNX9 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCX3AQ9NNX9 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VCX3AQ9NNX9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.33■□□□□ 0.52
VCX3AQ9NNX9 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCX3AQ9NNX9 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VCX3AQ9NNX9 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.33■□□□□ 0.52
VCX3AQ9NNX9 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCX3AQ9NNX9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
VCX3AQ9NNX9 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms