Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 AP006294.2-201ENST00000641667 209 ntBASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 AP001271.2-201ENST00000624018 1556 ntBASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 AP006587.1-201ENST00000534129 1502 ntBASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM39Q9HCM9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM39Q9HCM9 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 AC066615.1-201ENST00000640911 628 ntBASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM39Q9HCM9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 KRT16P5-201ENST00000455284 522 ntBASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms