Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 AC012306.2-201ENST00000609350 630 ntBASIC20.41■□□□□ 0.86
RNF38Q9H0F5 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 TMEM179-206ENST00000616017 1645 ntBASIC20.41■□□□□ 0.86
RNF38Q9H0F5 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF38Q9H0F5 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 MMP23A-201ENST00000234610 1017 ntBASIC20.4■□□□□ 0.86
RNF38Q9H0F5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.4■□□□□ 0.86
RNF38Q9H0F5 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 AL445675.2-201ENST00000620291 557 ntBASIC20.4■□□□□ 0.86
RNF38Q9H0F5 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.4■□□□□ 0.86
RNF38Q9H0F5 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF38Q9H0F5 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF38Q9H0F5 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF38Q9H0F5 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF38Q9H0F5 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF38Q9H0F5 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.39■□□□□ 0.86
RNF38Q9H0F5 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF38Q9H0F5 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF38Q9H0F5 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF38Q9H0F5 KRT8P9-201ENST00000558927 1449 ntBASIC20.39■□□□□ 0.85
RNF38Q9H0F5 UNC93B2-201ENST00000285383 730 ntBASIC20.39■□□□□ 0.85
RNF38Q9H0F5 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 AP000525.1-201ENST00000608286 694 ntBASIC20.39■□□□□ 0.85
RNF38Q9H0F5 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 AC097493.4-201ENST00000641197 219 ntBASIC20.39■□□□□ 0.85
RNF38Q9H0F5 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF38Q9H0F5 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 AL031985.4-201ENST00000642138 673 ntBASIC20.38■□□□□ 0.85
RNF38Q9H0F5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RNF38Q9H0F5 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 MESTP1-201ENST00000404287 994 ntBASIC20.37■□□□□ 0.85
RNF38Q9H0F5 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 AL157384.1-201ENST00000445995 2473 ntBASIC20.37■□□□□ 0.85
RNF38Q9H0F5 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF38Q9H0F5 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms