Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PAAF1Q9BRP4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PAAF1Q9BRP4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PAAF1Q9BRP4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 MIR1224-201ENST00000408193 85 ntBASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 B3GAT3P1-201ENST00000471720 806 ntBASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PAAF1Q9BRP4 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
PAAF1Q9BRP4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.02■□□□□ 0.95
PAAF1Q9BRP4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
PAAF1Q9BRP4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
PAAF1Q9BRP4 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 AC145285.6-201ENST00000604632 637 ntBASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 AC010947.1-201ENST00000623454 693 ntBASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 CLDN5-201ENST00000403084 2357 ntBASIC21.01■□□□□ 0.95
PAAF1Q9BRP4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PAAF1Q9BRP4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21■□□□□ 0.95
PAAF1Q9BRP4 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PAAF1Q9BRP4 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PAAF1Q9BRP4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PAAF1Q9BRP4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PAAF1Q9BRP4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PAAF1Q9BRP4 AC010331.1-201ENST00000611423 582 ntBASIC21■□□□□ 0.95
PAAF1Q9BRP4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PAAF1Q9BRP4 GABARAPL3-202ENST00000624044 1851 ntBASIC21■□□□□ 0.95
PAAF1Q9BRP4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PAAF1Q9BRP4 FSCN1P1-201ENST00000568912 1481 ntBASIC21■□□□□ 0.95
PAAF1Q9BRP4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
PAAF1Q9BRP4 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21■□□□□ 0.95
PAAF1Q9BRP4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 AC026271.3-201ENST00000571884 352 ntBASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
PAAF1Q9BRP4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.98■□□□□ 0.95
PAAF1Q9BRP4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms