Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC42Q96M95 DUX4L16-201ENST00000555130 1264 ntBASIC21.19■□□□□ 0.98
CCDC42Q96M95 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.19■□□□□ 0.98
CCDC42Q96M95 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC42Q96M95 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC42Q96M95 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC42Q96M95 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC42Q96M95 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC42Q96M95 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC42Q96M95 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC42Q96M95 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC42Q96M95 AC093503.3-201ENST00000624917 2352 ntBASIC21.18■□□□□ 0.98
CCDC42Q96M95 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC42Q96M95 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC42Q96M95 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC42Q96M95 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC42Q96M95 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC42Q96M95 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC42Q96M95 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC42Q96M95 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC42Q96M95 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
CCDC42Q96M95 LINC01465-201ENST00000408887 1940 ntBASIC21.17■□□□□ 0.98
CCDC42Q96M95 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC42Q96M95 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC42Q96M95 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC42Q96M95 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 AC069236.1-201ENST00000604339 616 ntBASIC21.17■□□□□ 0.98
CCDC42Q96M95 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC42Q96M95 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC42Q96M95 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC42Q96M95 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC42Q96M95 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CCDC42Q96M95 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC42Q96M95 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC42Q96M95 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC42Q96M95 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CCDC42Q96M95 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC42Q96M95 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC42Q96M95 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CCDC42Q96M95 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC42Q96M95 AC016769.1-201ENST00000409132 1010 ntBASIC21.16■□□□□ 0.98
CCDC42Q96M95 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC42Q96M95 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.16■□□□□ 0.98
CCDC42Q96M95 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC42Q96M95 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC42Q96M95 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.16■□□□□ 0.98
CCDC42Q96M95 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC42Q96M95 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC42Q96M95 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC42Q96M95 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC42Q96M95 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC42Q96M95 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC42Q96M95 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC42Q96M95 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CCDC42Q96M95 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC42Q96M95 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
CCDC42Q96M95 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC42Q96M95 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC42Q96M95 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms