Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC14.72□□□□□ -0.05
LINC00477Q96M19 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 AC087289.5-201ENST00000586076 3175 ntBASIC14.72□□□□□ -0.05
LINC00477Q96M19 AC090340.1-201ENST00000620778 4980 ntBASIC14.72□□□□□ -0.05
LINC00477Q96M19 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 AL355472.2-201ENST00000422958 438 ntBASIC14.72□□□□□ -0.05
LINC00477Q96M19 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC14.72□□□□□ -0.05
LINC00477Q96M19 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC14.72□□□□□ -0.05
LINC00477Q96M19 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC14.72□□□□□ -0.05
LINC00477Q96M19 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC14.72□□□□□ -0.05
LINC00477Q96M19 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC14.72□□□□□ -0.05
LINC00477Q96M19 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
LINC00477Q96M19 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC14.72□□□□□ -0.05
LINC00477Q96M19 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC14.71□□□□□ -0.05
LINC00477Q96M19 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
LINC00477Q96M19 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00477Q96M19 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
LINC00477Q96M19 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00477Q96M19 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00477Q96M19 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00477Q96M19 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00477Q96M19 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
LINC00477Q96M19 APTR-203ENST00000430801 583 ntTSL 5 BASIC14.71□□□□□ -0.05
LINC00477Q96M19 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC14.71□□□□□ -0.05
LINC00477Q96M19 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00477Q96M19 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC14.71□□□□□ -0.05
LINC00477Q96M19 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00477Q96M19 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00477Q96M19 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00477Q96M19 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00477Q96M19 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
LINC00477Q96M19 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LINC00477Q96M19 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LINC00477Q96M19 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC14.71□□□□□ -0.06
LINC00477Q96M19 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00477Q96M19 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
LINC00477Q96M19 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms