Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RNF5-204ENST00000487940 357 ntTSL 219.66■□□□□ 0.744e-6■■□□□ 12.7
DDX55Q8NHQ9 SYPL1-201ENST00000011473 2127 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.17e-7■■□□□ 12.7
DDX55Q8NHQ9 SYPL1-202ENST00000455385 2151 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.387e-7■■□□□ 12.7
DDX55Q8NHQ9 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.121e-6■■□□□ 12.7
DDX55Q8NHQ9 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.24■□□□□ 0.831e-6■■□□□ 12.7
DDX55Q8NHQ9 LSR-205ENST00000427250 1606 ntTSL 2 BASIC26.81■■□□□ 1.886e-8■■□□□ 12.7
DDX55Q8NHQ9 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.566e-8■■□□□ 12.7
DDX55Q8NHQ9 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.566e-8■■□□□ 12.7
DDX55Q8NHQ9 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.46■■□□□ 1.356e-8■■□□□ 12.7
DDX55Q8NHQ9 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.35■■□□□ 1.336e-8■■□□□ 12.7
DDX55Q8NHQ9 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.26e-8■■□□□ 12.7
DDX55Q8NHQ9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.16e-8■■□□□ 12.7
DDX55Q8NHQ9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.526e-8■■□□□ 12.7
DDX55Q8NHQ9 USF2-211ENST00000599471 1173 ntTSL 321.08■□□□□ 0.975e-18■■□□□ 12.7
DDX55Q8NHQ9 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.895e-12■■□□□ 12.7
DDX55Q8NHQ9 PRKCSH-203ENST00000586486 1613 ntTSL 1 (best)20.06■□□□□ 0.85e-12■■□□□ 12.7
DDX55Q8NHQ9 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.435e-12■■□□□ 12.7
DDX55Q8NHQ9 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.435e-12■■□□□ 12.7
DDX55Q8NHQ9 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.015e-12■■□□□ 12.7
DDX55Q8NHQ9 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC22.01■■□□□ 1.114e-8■■□□□ 12.7
DDX55Q8NHQ9 MRPL28-207ENST00000461550 1478 ntTSL 521.46■■□□□ 1.034e-8■■□□□ 12.7
DDX55Q8NHQ9 MRPL28-208ENST00000469744 1467 ntTSL 1 (best)21.46■■□□□ 1.034e-8■■□□□ 12.7
DDX55Q8NHQ9 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.984e-8■■□□□ 12.7
DDX55Q8NHQ9 MRPL28-209ENST00000481453 2229 ntTSL 220.33■□□□□ 0.844e-8■■□□□ 12.7
DDX55Q8NHQ9 MRPL28-210ENST00000483764 1512 ntTSL 1 (best)19.84■□□□□ 0.774e-8■■□□□ 12.7
DDX55Q8NHQ9 C2-202ENST00000383177 1847 ntTSL 515.96■□□□□ 0.155e-11■■□□□ 12.7
DDX55Q8NHQ9 C2-211ENST00000469372 1906 ntTSL 2 BASIC14.69□□□□□ -0.065e-11■■□□□ 12.7
DDX55Q8NHQ9 C2-206ENST00000442278 2434 ntTSL 2 BASIC14.51□□□□□ -0.095e-11■■□□□ 12.7
DDX55Q8NHQ9 C2-209ENST00000452323 1999 ntTSL 2 BASIC14.33□□□□□ -0.125e-11■■□□□ 12.7
DDX55Q8NHQ9 C2-210ENST00000468407 694 ntTSL 213.7□□□□□ -0.225e-11■■□□□ 12.7
DDX55Q8NHQ9 C2-215ENST00000486124 2800 ntTSL 510.86□□□□□ -0.675e-11■■□□□ 12.7
DDX55Q8NHQ9 C2-201ENST00000299367 2850 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.855e-11■■□□□ 12.7
DDX55Q8NHQ9 AKR1A1-207ENST00000475985 335 ntTSL 24.69□□□□□ -1.662e-10■■□□□ 12.7
DDX55Q8NHQ9 PIN1-205ENST00000586352 755 ntTSL 319■□□□□ 0.639e-7■■□□□ 12.7
DDX55Q8NHQ9 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.074e-6■■□□□ 12.7
DDX55Q8NHQ9 SLC25A39-217ENST00000593166 797 ntTSL 318.66■□□□□ 0.582e-6■■□□□ 12.7
DDX55Q8NHQ9 ATP5D-208ENST00000592624 1587 nt22.86■■□□□ 1.251e-25■■□□□ 12.7
DDX55Q8NHQ9 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.225e-39■■□□□ 12.7
DDX55Q8NHQ9 AHCY-204ENST00000480653 2211 ntTSL 215.95■□□□□ 0.145e-39■■□□□ 12.7
DDX55Q8NHQ9 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC14.83□□□□□ -0.045e-39■■□□□ 12.7
DDX55Q8NHQ9 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC8.79□□□□□ -15e-39■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC23.13■■□□□ 1.291e-15■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC22.03■■□□□ 1.121e-15■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.67■■□□□ 1.061e-15■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.031e-15■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.031e-15■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.29■□□□□ 0.841e-15■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-213ENST00000556465 220 ntTSL 319.47■□□□□ 0.711e-15■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC19.46■□□□□ 0.711e-15■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC19.23■□□□□ 0.671e-15■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-205ENST00000432849 411 ntTSL 2 BASIC12.52□□□□□ -0.411e-15■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-204ENST00000397505 333 ntTSL 5 BASIC12.33□□□□□ -0.441e-15■■□□□ 12.7
DDX55Q8NHQ9 MRPL52-214ENST00000556654 362 ntTSL 38.97□□□□□ -0.971e-15■■□□□ 12.7
DDX55Q8NHQ9 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.92■□□□□ 0.467e-7■■□□□ 12.7
DDX55Q8NHQ9 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC15.59■□□□□ 0.097e-7■■□□□ 12.7
DDX55Q8NHQ9 GDPD5-204ENST00000526177 4150 ntTSL 1 (best) BASIC14.8□□□□□ -0.047e-7■■□□□ 12.7
DDX55Q8NHQ9 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.077e-7■■□□□ 12.7
DDX55Q8NHQ9 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.197e-7■■□□□ 12.7
DDX55Q8NHQ9 GDPD5-206ENST00000527820 3211 ntTSL 1 (best)13.32□□□□□ -0.287e-7■■□□□ 12.7
DDX55Q8NHQ9 GDPD5-202ENST00000443276 3106 ntTSL 5 BASIC13.27□□□□□ -0.297e-7■■□□□ 12.7
DDX55Q8NHQ9 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.292e-18■■□□□ 12.7
DDX55Q8NHQ9 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC22.36■■□□□ 1.172e-18■■□□□ 12.7
DDX55Q8NHQ9 CALM2-203ENST00000432899 1004 ntTSL 516.98■□□□□ 0.312e-18■■□□□ 12.7
DDX55Q8NHQ9 STPG4-206ENST00000422269 983 ntTSL 212.42□□□□□ -0.422e-18■■□□□ 12.7
DDX55Q8NHQ9 CALM2-205ENST00000460218 4502 ntTSL 1 (best)1.68□□□□□ -2.142e-18■■□□□ 12.7
DDX55Q8NHQ9 NAP1L4-207ENST00000469805 2294 ntTSL 318.34■□□□□ 0.533e-7■■□□□ 12.7
DDX55Q8NHQ9 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.423e-7■■□□□ 12.7
DDX55Q8NHQ9 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.08■□□□□ 0.323e-7■■□□□ 12.7
DDX55Q8NHQ9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC31.37■■■□□ 2.612e-14■■□□□ 12.7
DDX55Q8NHQ9 RANBP1-211ENST00000448394 688 ntTSL 217.54■□□□□ 0.42e-14■■□□□ 12.7
DDX55Q8NHQ9 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.22■□□□□ 0.352e-14■■□□□ 12.7
DDX55Q8NHQ9 FKBP2-204ENST00000535135 639 ntTSL 330.15■■■□□ 2.426e-7■■□□□ 12.7
DDX55Q8NHQ9 PHC2-206ENST00000467894 1466 ntTSL 527.73■■■□□ 2.034e-11■■□□□ 12.7
DDX55Q8NHQ9 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.893e-15■■□□□ 12.7
DDX55Q8NHQ9 RPL8-203ENST00000525232 1007 ntTSL 1 (best)26.21■■□□□ 1.793e-15■■□□□ 12.7
DDX55Q8NHQ9 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.534e-7■■□□□ 12.7
DDX55Q8NHQ9 FKBP2-205ENST00000536642 637 ntTSL 224.1■■□□□ 1.456e-7■■□□□ 12.7
DDX55Q8NHQ9 SLC50A1-211ENST00000490276 778 ntTSL 324.06■■□□□ 1.446e-7■■□□□ 12.7
DDX55Q8NHQ9 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.416e-7■■□□□ 12.7
DDX55Q8NHQ9 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.414e-7■■□□□ 12.7
DDX55Q8NHQ9 FKBP2-206ENST00000541388 705 ntTSL 523.74■■□□□ 1.396e-7■■□□□ 12.7
DDX55Q8NHQ9 SYNJ2-206ENST00000485863 810 ntTSL 323.5■■□□□ 1.356e-7■■□□□ 12.7
DDX55Q8NHQ9 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC23.4■■□□□ 1.346e-7■■□□□ 12.7
DDX55Q8NHQ9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.286e-7■■□□□ 12.7
DDX55Q8NHQ9 CARD10-206ENST00000467812 1910 ntTSL 222.74■■□□□ 1.236e-7■■□□□ 12.7
DDX55Q8NHQ9 CARD10-209ENST00000488141 2169 ntTSL 222.65■■□□□ 1.226e-7■■□□□ 12.7
DDX55Q8NHQ9 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC22.26■■□□□ 1.157e-9■■□□□ 12.7
DDX55Q8NHQ9 HLA-F-220ENST00000434407 884 ntBASIC22.26■■□□□ 1.157e-9■■□□□ 12.7
DDX55Q8NHQ9 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.083e-15■■□□□ 12.7
DDX55Q8NHQ9 AKT1-205ENST00000553506 2830 ntTSL 221.33■■□□□ 1.014e-7■■□□□ 12.7
DDX55Q8NHQ9 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 16e-7■■□□□ 12.7
DDX55Q8NHQ9 RPL8-206ENST00000528296 540 ntTSL 320.92■□□□□ 0.943e-15■■□□□ 12.7
DDX55Q8NHQ9 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.923e-15■■□□□ 12.7
DDX55Q8NHQ9 RPL8-209ENST00000529920 876 ntTSL 220.63■□□□□ 0.893e-15■■□□□ 12.7
DDX55Q8NHQ9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.39■□□□□ 0.866e-7■■□□□ 12.7
DDX55Q8NHQ9 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.38■□□□□ 0.856e-7■■□□□ 12.7
DDX55Q8NHQ9 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.856e-7■■□□□ 12.7
DDX55Q8NHQ9 RPL8-213ENST00000533397 730 ntTSL 220.26■□□□□ 0.833e-15■■□□□ 12.7
DDX55Q8NHQ9 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.13■□□□□ 0.817e-9■■□□□ 12.7
DDX55Q8NHQ9 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.84■□□□□ 0.776e-7■■□□□ 12.7
Retrieved 100 of 15,504 protein–RNA pairs in 111 ms