Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 YBX1P10-201ENST00000444752 975 ntBASIC20.2■□□□□ 0.82
RTL3Q8N8U3 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 AC124016.1-201ENST00000609552 612 ntBASIC20.2■□□□□ 0.82
RTL3Q8N8U3 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 NBPF21P-201ENST00000425093 1451 ntBASIC20.19■□□□□ 0.82
RTL3Q8N8U3 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 KRASP1-201ENST00000407852 552 ntBASIC20.19■□□□□ 0.82
RTL3Q8N8U3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 AC133681.1-201ENST00000465482 601 ntBASIC20.19■□□□□ 0.82
RTL3Q8N8U3 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.19■□□□□ 0.82
RTL3Q8N8U3 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.19■□□□□ 0.82
RTL3Q8N8U3 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 AC125437.2-201ENST00000625180 2167 ntBASIC20.18■□□□□ 0.82
RTL3Q8N8U3 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 C1QBPP2-201ENST00000528754 825 ntBASIC20.18■□□□□ 0.82
RTL3Q8N8U3 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.18■□□□□ 0.82
RTL3Q8N8U3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 RPPH1-201ENST00000516869 333 ntBASIC20.17■□□□□ 0.82
RTL3Q8N8U3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 AFG3L1P-217ENST00000557444 2447 ntBASIC20.17■□□□□ 0.82
RTL3Q8N8U3 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RTL3Q8N8U3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RTL3Q8N8U3 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms