Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USP48Q86UV5 DUX4L26-201ENST00000489078 1255 ntBASIC24.12■■□□□ 1.45
USP48Q86UV5 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC24.12■■□□□ 1.45
USP48Q86UV5 AC010947.1-201ENST00000623454 693 ntBASIC24.12■■□□□ 1.45
USP48Q86UV5 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
USP48Q86UV5 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
USP48Q86UV5 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC24.12■■□□□ 1.45
USP48Q86UV5 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP48Q86UV5 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC24.12■■□□□ 1.45
USP48Q86UV5 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USP48Q86UV5 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
USP48Q86UV5 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
USP48Q86UV5 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USP48Q86UV5 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
USP48Q86UV5 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP48Q86UV5 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP48Q86UV5 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USP48Q86UV5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USP48Q86UV5 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC24.11■■□□□ 1.45
USP48Q86UV5 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC24.11■■□□□ 1.45
USP48Q86UV5 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP48Q86UV5 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP48Q86UV5 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USP48Q86UV5 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
USP48Q86UV5 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC24.11■■□□□ 1.45
USP48Q86UV5 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC24.11■■□□□ 1.45
USP48Q86UV5 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC24.11■■□□□ 1.45
USP48Q86UV5 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USP48Q86UV5 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP48Q86UV5 AC027702.1-201ENST00000563810 1770 ntBASIC24.11■■□□□ 1.45
USP48Q86UV5 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP48Q86UV5 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC24.1■■□□□ 1.45
USP48Q86UV5 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC24.1■■□□□ 1.45
USP48Q86UV5 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
USP48Q86UV5 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC24.1■■□□□ 1.45
USP48Q86UV5 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC24.1■■□□□ 1.45
USP48Q86UV5 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
USP48Q86UV5 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
USP48Q86UV5 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
USP48Q86UV5 AC087388.1-201ENST00000571370 1112 ntBASIC24.1■■□□□ 1.45
USP48Q86UV5 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC24.1■■□□□ 1.45
USP48Q86UV5 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
USP48Q86UV5 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC24.1■■□□□ 1.45
USP48Q86UV5 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
USP48Q86UV5 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC24.1■■□□□ 1.45
USP48Q86UV5 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
USP48Q86UV5 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP48Q86UV5 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC24.09■■□□□ 1.45
USP48Q86UV5 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP48Q86UV5 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC24.09■■□□□ 1.45
USP48Q86UV5 AP002982.1-201ENST00000492365 877 ntBASIC24.09■■□□□ 1.45
USP48Q86UV5 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC24.09■■□□□ 1.45
USP48Q86UV5 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP48Q86UV5 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC24.09■■□□□ 1.45
USP48Q86UV5 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP48Q86UV5 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP48Q86UV5 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
USP48Q86UV5 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP48Q86UV5 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP48Q86UV5 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
USP48Q86UV5 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
USP48Q86UV5 ADM-207ENST00000530439 1839 ntTSL 2 BASIC24.08■■□□□ 1.45
USP48Q86UV5 AC121338.2-201ENST00000622535 1744 ntBASIC24.08■■□□□ 1.45
USP48Q86UV5 AFG3L1P-217ENST00000557444 2447 ntBASIC24.08■■□□□ 1.45
USP48Q86UV5 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
USP48Q86UV5 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
USP48Q86UV5 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC24.08■■□□□ 1.45
USP48Q86UV5 SLC25A3P1-201ENST00000443844 931 ntBASIC24.08■■□□□ 1.45
USP48Q86UV5 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC24.08■■□□□ 1.45
USP48Q86UV5 TMA16-209ENST00000513272 803 ntTSL 2 BASIC24.08■■□□□ 1.45
USP48Q86UV5 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC24.08■■□□□ 1.45
USP48Q86UV5 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC24.08■■□□□ 1.45
USP48Q86UV5 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
USP48Q86UV5 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
USP48Q86UV5 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
USP48Q86UV5 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
USP48Q86UV5 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
USP48Q86UV5 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.44
USP48Q86UV5 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
USP48Q86UV5 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
USP48Q86UV5 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP48Q86UV5 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP48Q86UV5 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP48Q86UV5 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC24.07■■□□□ 1.44
USP48Q86UV5 FITM1-202ENST00000559294 800 ntBASIC24.07■■□□□ 1.44
USP48Q86UV5 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC24.07■■□□□ 1.44
USP48Q86UV5 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP48Q86UV5 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
USP48Q86UV5 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP48Q86UV5 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
USP48Q86UV5 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC24.06■■□□□ 1.44
USP48Q86UV5 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP48Q86UV5 STK25-205ENST00000405883 1904 ntTSL 2 BASIC24.06■■□□□ 1.44
USP48Q86UV5 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
USP48Q86UV5 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP48Q86UV5 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP48Q86UV5 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC24.06■■□□□ 1.44
USP48Q86UV5 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC24.06■■□□□ 1.44
USP48Q86UV5 PNN-205ENST00000556530 601 ntTSL 2 BASIC24.06■■□□□ 1.44
USP48Q86UV5 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC24.06■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms